RNA id: TU193006


Basic Information

Item Value
RNA id TU193006
length 3348
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G153274
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5916835 ~ 5955451 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGAAACCAATATCTTTAATGAGCAACAGAAGGCAACCAACTCTCCTAAAACGTACACATGCTTATACAACAGTATTCGATTGAAACCGTTTCTCTCCTGTGGATTTTCCTCTCTTCTTACTGAAATGggcttttttttctattcttagTCTTCATTTACCCAGACTTCACCCTCACAGATAGGCAGGTTAAAGGTGGCCAAGCCCCTTAGAACTGCATCACCGTGATAACCCAGTtgtcttcctgtctccctggccgACTCGGTTTTTCTAAAGAATGATGCAGCAGAACATGCATATAATTGTAAACTGTCATGTAAACAGCCATGAAATCCTGTCACCAGTCAATTTCATAagtgtgcttttctttctatctttttccttcttcctttccttctttcttttcgGACCGAACACTGTAGTGAGGATCAGTGTCAACAGGAATGATAGAAAACaaagtatatgtatacataataaaataaggatGTAAACCATTTGACTCAACATATAtatcaaagaaaggaaaatggtGGCTTTCAAGTAGtaagatttctttcttttccttctttgttttaagtttgcttCACTGGAATTGCACAGAAGTAAACAAACCTACAGGAAGAGATGCTTTGAACTTTGACTAACACAACCCTCCCCACCCTGCCCTCCATCCCCATTCCCCCCCACATCAtcacaacaaacacatttactcTCTTGTCACAATGCAGTAAAGGACATTGACTTCAGAATGCCATTATGGAGAGAGGGATACTGGGAGTACATATTTGCAGGAGGAGCTACTGTGGGTACTGACCCTGACAACTCAACCACTTCTCCCTCTAGTGCGTTACTAAGGTTGGCAGCCTTAATCACCACTGCAAAAGGCCACAGGTCGCATGAGAAGCCTAACTAGTGACTAATTGTGACCTAATCTGTCGATTTCCCTTTCCCAGCCTATCGGTTCGTAAATCTATCTTATATCAACACCTTGTTAGGGAAAGCTCCATGCTGGCTAAGACATGAAGTCTATGCCGCCTGAAGGCTATATTGTAGGATGACATTCATGGCGCTAAAGTGCTTGTGGTTTTCCGGCTTAAAAGATGTCACCCATTCAGCGACAACAACGTGGCCTGTACCAAGTAGATGCCTTGCAAATTGTATTATGTGAACACTCCAGATGCCTTatgcattgctttgtttttgattttacgAGCTTGTCATggcatatatacattataatgttCAGAATTATTTACTCCCAGTGTTTGTCTTTGAGACGTCAGTCCATAGAAACTGATAAGTCTGTGATGGGAGATCCAGCGCCATTTTGTTGTCTCATGCCTAgcttctgaaatctgaaatgtcaCCTGACTGGCAGTCGGTCAACAGgccagttttattttacaggatGCGCGAGAGGTTAGCAGCACAGCCCTGGAGTCTCGCCGAGAAGCAGCCTCCTTATCGTTGTTTTTAGGAAACGAACTGCATGAAAGCATTTGCTCTTCATCCAGATGCCACTCAGTATTCAGATGATATTGGGAAGAAATCATTAATTTGctatagttttgttttacagatctGTATTATGTTTAGCAATTGTTAGGTGGTTTTATAACCAAATTACTCCTTCAGCAACCCCTGTATTTGTGATATGTCTGTTTTGGCATACAAAACAGGTTGTCGTTCGCTACAATGTTGTGGAACGGGTCACAGACTCTTGAATATTCCTACACACTCTCTTTTCCTTATAATCCCACCTGCAGAACCTCAACTCACTTCTTAAACCCCCAACTATCCAACCCACACCTACCCTATGAAACTAGGCCTGCATGAACCAGGTATAATCTCTTACAATTTCATCTGTAAGCCAGCATCGCCCTCACTCTACCATGTGCCCCTGTCTAACACTGAGCCTTCTCAAACAACCAGAACAATCTCTTCCCCACACAAGCTTGAGCTTCTCATGCCTTTCTTTCTATACATCTATGCGTGTCCATATCCCTATGTTTTCCCCCTGTCATATCCACCCAAATAAAATAGGCAATTCCTCTTTAACCCAGCTGCAAACCTTTCTACACCCCCGATTCCAACAGGCTTATCACAACATCAGGATGATACGCCATGACTCTGCCTAAGGTGAAGTTAGGACAGTGTAGTAATCCAACACTAGAGTAATAACCAGCTGTAATAACAAAACTATAGCAATGATAGATGCCAAGTGACTGCAGTACCAGTATAGCTATCTTAATCGGGGGAAAGAAAACGTAATTATGGTGACAGTGTAAGTGGAATGGAAATAGTCTCAGCAGTTTCCCATCGTGCCTGTTATTGTCCTATTTGTCTTTGAGCTAAGATACTTCGGTTGTTCTTGGTGCTCCAACGATCTACTTCCCAAAACGATCAACCTCTAACCCTCCAGCACCAGGCAATAATCTCTCCGCCAGATTTCCGTTATTTTCCCACAAACAAGGAACAAGAATCACGGGACATCGTCACGGAGGACAGACCACCATCCCAGAAAATGTGCAAGTCTCCACTCAACCTACACTGCACCATAGAGTTCAGCAGACAGGACTGTTGCCTATGGTAGGGCAAATGAAACCCTGAGAAACCACAGCAAAAGCACTGAGTTCAATTTACAACTAAACTCAACCAAATGATCAATATATGTGTCAGCTGCATTTAAGGTACCTGAAGCTAAGTTGGTGCTGTTTATCTTTGTTTCCGAGGCTCCCCCCCCTCCTGTTTAAACCACAAGCTGTTTaatgacagagagaaaaatacaaatacaaaaaaaaaaaaaaatcaaccaaaaAAGGTGATGTCAGTCGCACAAATGCGGAAAGGCCCACAATATTAGGAGCGCAAAACCATGACGTGTTCTctacgtttttttttccccccaaaccaaaaagaaaatgtgaaaagtttACTTCATTGTGACTATGCAATACAACTCGCCAAATACAGCTGTGAAATGGTATAGAAGAGCTCttgtcattttctctttttattttgctcttgtGCAAACTCTACATAAATGACTCACATTCAATTTATTCATCACTCGGGAGAccgctaaaaaaataaaataataaaattaaaataaataaatggtccGTGTGTGAAGTAATTCCTTACAGAAACACTGATTCTGAAAAATTAATCACTGTTCAAAGCTTAAATAGTTCACTGCATAACATGACAGAGAAAGCACAAACAGAAAGGTCATTCTAAGAACAACATATTCATCGTttacattgtaataattataatttcaccaTGACAAACACCAGACAGTAAGATTAAGCTAacactggtgtttttttttttttTTGTTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193001 lncRNA upstream 115943 5800648 ~ 5800892 (+) True G153271
TU192858 lncRNA upstream 471578 5444379 ~ 5445257 (+) True G153154
TU192816 lncRNA upstream 592912 5321060 ~ 5323923 (+) True G153118
TU192811 lncRNA upstream 607744 5307945 ~ 5309091 (+) True G153113
TU192775 lncRNA upstream 715300 5195788 ~ 5201535 (+) True G153082
TU193057 lncRNA downstream 92679 6048130 ~ 6048438 (+) True G153312
TU193099 lncRNA downstream 276708 6232159 ~ 6234047 (+) True G153348
TU193133 lncRNA downstream 327537 6282988 ~ 6331371 (+) True G153381
TU193146 lncRNA downstream 377801 6333252 ~ 6393728 (+) True G153390
TU193199 lncRNA downstream 480013 6435464 ~ 6436739 (+) False AMCG00005647
AMCG00005608 mRNA upstream 12196 5901491 ~ 5904639 (+) True AMCG00005608
AMCG00005609 mRNA upstream 20531 5891753 ~ 5896304 (+) True AMCG00005609
AMCG00005607 mRNA upstream 34544 5868340 ~ 5882291 (+) True AMCG00005607
AMCG00005594 mRNA upstream 70351 5845595 ~ 5846484 (+) True AMCG00005594
AMCG00005595 mRNA upstream 114779 5785094 ~ 5802056 (+) True AMCG00005595
AMCG00005600 mRNA downstream 48941 6004392 ~ 6045735 (+) True AMCG00005600
AMCG00005599 mRNA downstream 117775 6073226 ~ 6077726 (+) True AMCG00005599
AMCG00005597 mRNA downstream 195848 6151299 ~ 6155374 (+) True AMCG00005597
AMCG00005626 mRNA downstream 250367 6205818 ~ 6229880 (+) True AMCG00005626
AMCG00005627 mRNA downstream 280183 6235634 ~ 6240612 (+) True AMCG00005627
TU192781 other upstream 694920 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 1355351 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 1631872 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 2645996 3266742 ~ 3270839 (+) False AMCG00005498
TU193227 other downstream 532267 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 1305226 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 2260439 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 2548744 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 3480449 9435900 ~ 9438269 (+) True G154251

Expression Profile