RNA id: TU194290


Basic Information

Item Value
RNA id TU194290
length 2370
RNA type TUCP
GC content 0.47
exon number 1
gene id G154251
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9435900 ~ 9438269 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagaaagaaaaataactaaatttaaaaaacattaatttaaaaaacaaactttttttttccgcTTTCTGTACAAGGCGACAGTTGCAGAGAGAACAGCTCAGTGCTGGTTGGTTGTCCTGTGCGGCCGAATCGCGTTGCGTTGGGGAAACCGGGATCAGCACAATGTTCCCATTCCAATGTCACCAtaagctacacacacacgcgcgctcAGTCGCAGGCAGCACCCAACACAGCCACACAGTAATGCACCCTCTCGACAGCCTCGTAGTCCTATCAGACagaggccactccaggaccaggcTCTGGACTAAGATGGAGGGCAGACCATCAATGAGGGGGATGCAGTGTCATGACGTGTAAGCGGGGGATAGTTTTCACCACAGGATGGAGGGGAAGGCGGGGGGGCAGACACATggcttacaaaacataaaaattaaatctttccAAATTCCTTTCAGATCCTATAATCtgagacatatatatatatatatatatatatatataaaaaatacacaatctgCTTCCTGTACAACAAAGCCCTGAAGCCAAGCTAGATGAGCACTGGATTGATGCTGTCCTGCTTGTGACCCTTGACCTGCAAAATCAATGAGGTTCTTCAGGTATCACTGTGTGCACCCCTCACTCTTCCCCATCCCTGTGCAAAACCCCACAAAGCTGGAGAAACAATAGCAAAGCCGTCTGCCAGCGCTGCGATTCTAGACCTCAAGTCAGCTCATGTAAGAGGATGACTGTCTCGTTAAAACGGCAGACCCTTAGCACCACCTCTCCTTAAAAGCGGCAGAAGCAAAGCACATTGTTTTAAGAGTAATTTCAACCAaaaaagaagggggaaaaaaggaatttACAATGCATCTCATACATCACATTGGAGTCCACATGCAACACTTAACAGATAAATTATTCTGTCAGCACAATTTGAGTTTAAACAGAGAGCATGgaccagccagccagccagccagccaaccCAGCCTCAGGCAGactacagcacagagcacagctcCACAACCCGATCATCTGTCTGCACTCtgccttacacacacacacacacacgcacactctctgCAGACTCTCCCtgccttacacacacacactcacttactgccttacacacattcacaaacagacagacacaatctCACTCTGACTCTTAGAAACTCATTCATGCTACACACACAACTGCTATCACACAACCCTATAAGAACAACCCCCCTATACAGAGACCAGCGCACAGGACCAACCAACACTGGGCACCAGGATTCAAAGGaataatcaacaacaaaaatcaaacaaagccaaaaaaaagaaaaagaacaagcaCAACCAGCTTTTACagacaaatctgtttttaaaacccaagtcatttttatatgaagaaaaaaacgaaGAACATTTGTATGACATTAATAAAAGATGTTATGAAGTCAGCAAACtcatacattcataaaacatatcaaatgaaaaactgcagtgctgaaataatgtgtgtgtgtatagtgggGTGGGGAGTCAGGCAGAGTGCAGCATTTTCTTCCTAGAAACATTACAACTGGTCTGGTGACACCACTTTAAACATCGCTTATGCAGAACATCTTGACGCTAGTGTTGAAAAGTTGTTGCACAGACTAGATTCTAGGTTATTGGGGGAGCCCAATGACTGTGCGTCCCTCCCAGCTCTCCGTAAGGGCAATCCTGTCTCGGGCTGCTGTGGTGTCCCTGCTGCACTGCCTCTATAGAAGGGGCCTCCTGCACCTCATCACTTGCAGGGTCATTGTGGGGAAACAAAGGATGGCAATAGCTGACCTGGAGTTTCACAGACAAGTGAAAACTCATGAACTAGATTGcacattcagacacacactgactcattcttcataaaaataatcacacacacacacacacacacacacacacagcatcctTCGCCCCAGTCCCCAGAGAACGGCTGGTGTGAGGTAAGAAGTGATGACTGATCACTGCTGAGAATTTAGTTCACACCAACAATCCCCCCAGACCCCCCCTTTCCACCCACCCACGCACGCACCCTCAGCCTTGGCTGGCTGCCAACCTGCAGACTTGTACAACCTGCAAATGCCAAAGGTCCTGGGTGTCCAGTGTCTGGGAGCTCCAGTGCCCTGACCCACCGGGCACGTGTCACGGGGAGCAGAGCCGCTACCAGACTGGCAGACGGGGACAGGGACGGGCAATTCTAGAGCCTGTGATATACCTGCTCTGAGATCAGACAGCAGGACTCCAGTTTCTGGTAGTGGACACTCTGagctcctccctctctctcacacacaaacattttggtTCACACTCGGAAAatgattaattgcattttttttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194189 lncRNA upstream 241713 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 327530 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 327530 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 341230 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 364153 9021950 ~ 9071747 (+) True G154091
TU194291 lncRNA downstream 2224 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 467503 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 640038 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 829004 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 847245 10285514 ~ 10332094 (+) False G154447
AMCG00005763 mRNA upstream 8356 9425307 ~ 9427544 (+) True AMCG00005763
AMCG00005764 mRNA upstream 29027 9397125 ~ 9406873 (+) True AMCG00005764
AMCG00005783 mRNA upstream 86479 9346443 ~ 9349421 (+) True AMCG00005783
AMCG00005784 mRNA upstream 105310 9299585 ~ 9330590 (+) True AMCG00005784
AMCG00005775 mRNA upstream 166664 9252354 ~ 9269236 (+) True AMCG00005775
AMCG00005767 mRNA downstream 360728 9798997 ~ 9808730 (+) True AMCG00005767
AMCG00005768 mRNA downstream 422650 9860919 ~ 9868588 (+) True AMCG00005768
AMCG00005808 mRNA downstream 469577 9907846 ~ 9921070 (+) True AMCG00005808
AMCG00005807 mRNA downstream 503193 9941462 ~ 9943324 (+) True AMCG00005807
AMCG00005806 mRNA downstream 508483 9946752 ~ 9968147 (+) True AMCG00005806
TU193852 other upstream 928825 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1205310 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 2169929 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2947280 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 4213985 5214823 ~ 5221915 (+) False AMCG00005583
TU194323 other downstream 149533 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 443113 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 626891 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 642166 10080435 ~ 10087692 (+) False AMCG00005802
TU194579 other downstream 1024268 10462537 ~ 10468351 (+) False AMCG00005821

Expression Profile