RNA id: TU194560


Basic Information

Item Value
RNA id TU194560
length 2384
lncRNA type read_through
GC content 0.49
exon number 2
gene id G154473
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10419906 ~ 10489854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacaacacacacacacacacacacacacacacacacacacacacacacacacacacacccctgtgAAGCTCTACTGGAGACAGTGCTGCCGGGTTCGAGTCTGATCAgctctcctttctttcttacAAGTAATAACGGATGTTGTGTGTGGTGGTTATAGGGTCATGAGGGTGGGGCTGTGTTACTGCACCCCCTGACCCCAGCACAAGACCCAGTCTCATtcagagctcaggtggaattaACACCAGGAaccctgtactgtactggactgtagcACTCCAGAACCAGGGCTGTACTGGACTGGGTCAGGGTTGTCCAGAGGTTACAGGGCTCTATAACATCAACATTCAGCTAAAAAATATCACCTTCCTCCTCcagtttaaacacaaacacatcccaGTCACACCCAGTCCAGTACAGCTCTTGCCCAAGTCCAGTTCTGTGCCATACAGGAAAGTATAGTATAGTCACCTCTATAGAAGGGAAGACTGGGTCACACAGGTCAACAGGAGGTCAGGGGAGAACCTGCGGCCCTTCAGGATGGGAAACTGaccccagacagacagacagacagacagacaaacagacgcACCTCAACATTGGGCACTGCCAGCAGTGTAGCCCCAgactgaaagacagacagacacacacagctagGCAAGGGAACAAGTAGAGGCACACAGATGTAAACGGACACATGGACAGACTAAAGCCAATACACAGCTGTTTGATCTTATGGCATCAGGGGAAGTAGCTTTCGCAGATTTTGATCTCCTATattagacacacaaacagacaggcagACTGGACAAGGCACAGCAAAGACGATACTGACTTacagaaggaaagagagagagatagatagacctaccccctcccctctcctagTGAAGACTTACAGTGAAGCACAGCCTCATACTGTAGTGTTTATCCTTCGTTTGTGTGTAGTGttggacagacagacattcCCACCCCACTTTACTACTGAGGTCAGGGGTCACAGGAAATAGGGGAGgaggggtcaaaggtcaatcTCCCAAGAGTTCTTTCCTGCTCTCTCAATACCTGACTGCCATCACCTGCTGGCTGGGTGAAATATTATTTACTGACTTTTATATGAGAACATGACACTAGAAAGCGCAGACCAAGGGACCCCGGGGCCACTAACACAGGCATGCTGCTCCCCGGAAACCCGCATGGCATCTCTGGGTGCAGGAGCACAGCCTCAGCAGGCAGGGCTCCGCCCGGGTCCCACAGCGAGAGCAAAAAATGCCAATGCTTTGTATTATACTGCACTCCCCTGCCTAACActcccacactgcactgtataatACTGCACAGCACTACAGCGCACTGTGGGCCACTACACTGctctgtattgcactgtataaCACTGGACTGCAATGCACTGCTGATCAATTAATAATACGGCCTGCTGTACGGCACTGCACTGAACCATGACACATTGCATTGGTTGTACTGTGGTGTAGTGTACGTATTATATTGTAGTGTACAGATATGTATTTTAGTGTACAGTACTCGACAggactataatatatataggtTTCCTGCAGCCCTGTGTGGCCCAGGCTGTCTGCTGCTGTGTCCTGGGCCCTAAAACTACACCACCTGGCCTCCCAGCTGACTGTcagcgggaggaggaggagaatgaGGGGTTAATATGAGTTTAATTAGGTAATTATCTTTAGTAATTAAAAGTGCAGTGACACAGCTGCGCAGTCACAGTGGCTCTGAGTGGTTAATACAACTCCCAACTGGAGATTGAACAGAATAGAAACAGCACTAGAACATCCCCCCTAGGGCAGAGCTGCCAAGGTGACAGTGGCCACCAGCAGGTGGCACTGCCCTGGGGAGAAACCCCCACCAAGAGAATATCTCATCGATTTAtgcaattcattatttatgtgtgtatgtgtttatacaAAAGTCATCGTGTCTTTCTAAGGAAACCCCAGAGGAGGCATCCTGGAGCATGTCAGGAGCAACACCCGACATCGTGaggaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagtgttggTGTGTAACAGCGTGTCTCTCAGTGAACTTGTAGGTTTGcacatgtgagtgtgtgtgtgtgtgtgtgtgtgtgagacagagtgTAGACATGTGTGGGTGCACGCGTGTTTGAGTGTGCGAGAGTTCGtaagagattgtgtgtgtgtatgagtgaatGAGTTcgagtgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagagtgtgtcagagattgtgtgtgtgtaagatgGCTCCCCATGCAGGGCAGCTGCAATCATTTTCTTGATCAGAACAGGAATGTAAAAAAACTCATTTCCCTTCCTTTCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194520 lncRNA upstream 63662 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA upstream 87812 10285514 ~ 10332094 (+) False G154447
TU194527 lncRNA upstream 90907 10328035 ~ 10328999 (+) True G154447
TU194536 lncRNA upstream 114997 10304218 ~ 10304909 (+) False AMCG00005851
TU194535 lncRNA upstream 116409 10302957 ~ 10303497 (+) True G154451
TU194598 lncRNA downstream 34113 10523967 ~ 10526052 (+) True G154505
TU194687 lncRNA downstream 86125 10575979 ~ 10576437 (+) True G154574
TU194696 lncRNA downstream 178144 10667998 ~ 10668261 (+) True G154583
TU194697 lncRNA downstream 200289 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA downstream 200289 10690143 ~ 10693953 (+) True AMCG00005835
AMCG00005820 mRNA upstream 3769 10412525 ~ 10416137 (+) True AMCG00005820
AMCG00005851 mRNA upstream 115069 10297889 ~ 10304837 (+) True AMCG00005851
AMCG00005929 mRNA upstream 148446 10267273 ~ 10271460 (+) False AMCG00005929
AMCG00005927 mRNA upstream 158441 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005928 mRNA upstream 201581 10207320 ~ 10218325 (+) True AMCG00005928
AMCG00005858 mRNA downstream 12653 10502507 ~ 10502822 (+) True AMCG00005858
AMCG00005856 mRNA downstream 13724 10503578 ~ 10507292 (+) True AMCG00005856
AMCG00005857 mRNA downstream 31002 10520856 ~ 10523831 (+) True AMCG00005857
AMCG00005804 mRNA downstream 126028 10615882 ~ 10623009 (+) True AMCG00005804
AMCG00005803 mRNA downstream 136595 10626449 ~ 10633432 (+) True AMCG00005803
TU194450 other upstream 332214 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 343404 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 535951 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 830108 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 981637 9435900 ~ 9438269 (+) True G154251
TU194591 other downstream 22650 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 232478 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 423543 10913397 ~ 10915729 (+) True G154636
TU194894 other downstream 517690 11007544 ~ 11010354 (+) True AMCG00005840
TU194931 other downstream 593307 11083161 ~ 11086011 (+) True G154756

Expression Profile