RNA id: TU33806


Basic Information

Item Value
RNA id TU33806
length 333
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G26995
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35537304 ~ 35537636 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCCGGAAAAAGGTAAAGAAAGACCGTGAGGATCTTGCCGACTTCTAGCGCCGAAGGTCCTGCCCCTTTCCCCATAACCATCCATCCAGCACGGGCTCgcacctctctcctctccctgctcAAGAGAGGCGGACAGACTCAATCAGGAGATGAACTTGTGTCATGGTGGTTTAAGGTTGCAAATCCAGGCAGGAAGGCAAAGCAGCGAAGGCGGAAGGCGAGCAGCGACGGAAAACCATCCCTTCGGATCAGAATGAAAAACTAATCAAGTCTAAATGTGGCGGAGCGAAGTGTATTTTCCGTccctttcctctcctctgcCTTCCCTCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33805 lncRNA downstream 5866 35530930 ~ 35531438 (-) True G26994
TU33762 lncRNA downstream 720384 34816694 ~ 34816920 (-) True G26952
TU33753 lncRNA downstream 740451 34796169 ~ 34796853 (-) True G26943
TU33700 lncRNA downstream 1283739 34249199 ~ 34253565 (-) True G26893
TU33689 lncRNA downstream 1314073 34189496 ~ 34223231 (-) True G26883
TU33808 lncRNA upstream 13235 35550871 ~ 35552507 (-) True G26997
TU33838 lncRNA upstream 57794 35595430 ~ 35603175 (-) True G27023
TU33928 lncRNA upstream 465557 36003193 ~ 36005750 (-) False AMCG00007883
TU33930 lncRNA upstream 471840 36009476 ~ 36010995 (-) False AMCG00007883
TU33939 lncRNA upstream 489087 36026723 ~ 36026983 (-) True G27107
AMCG00007869 mRNA downstream 732426 34796895 ~ 34804878 (-) True AMCG00007869
AMCG00007861 mRNA downstream 1494408 34011110 ~ 34042896 (-) True AMCG00007861
AMCG00007862 mRNA downstream 1537566 33995712 ~ 33999738 (-) True AMCG00007862
AMCG00007859 mRNA downstream 1599224 33922475 ~ 33938080 (-) True AMCG00007859
AMCG00007856 mRNA downstream 1723371 33800570 ~ 33813933 (-) True AMCG00007856
AMCG00007874 mRNA upstream 18614 35556250 ~ 35594137 (-) True AMCG00007874
AMCG00007875 mRNA upstream 88174 35625810 ~ 35637920 (-) True AMCG00007875
AMCG00007876 mRNA upstream 112208 35649844 ~ 35665471 (-) True AMCG00007876
AMCG00007877 mRNA upstream 180388 35718024 ~ 35735817 (-) True AMCG00007877
AMCG00007880 mRNA upstream 302517 35840153 ~ 35852765 (-) True AMCG00007880
TU33771 other downstream 667497 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 9905712 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 10272353 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 11269383 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 11564639 23971671 ~ 23972665 (-) True G25026
TU34246 other upstream 1702453 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 1957275 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 2029981 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 2033321 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 2035398 37573034 ~ 37588525 (-) True G27442

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_01474110_01481148.mRNA True 2205 mRNA 0.49 4 CI01000013 1473790 ~ 1481692 (-)
eurasian perch (Perca fluviatilis) TU183059 True 2008 lncRNA 0.48 6 NC_053124.1 24729924 ~ 24744868 (-)
tiger barb (Puntius tetrazona) TU183059 True 950 lncRNA 0.54 2 NC_056716.1 2445601 ~ 2449435 (+)