RNA id: AMCG00009712


Basic Information

Item Value
RNA id AMCG00009712
length 3252
RNA type mRNA
GC content 0.61
exon number 13
gene id AMCG00009712
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44856527 ~ 44881725 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCACCATGCCTCCCGTTGGCGTGGGGGAGCAGCTGTCACTCGGCCCGCTGGTGGGTGCTGCTGTGGGTGCTGTGGGCGTGGTTGGGACAGGGGGCGTGCGGTCACCACGGCACCCAGCCCCACTCCATCAAGATCGAGGGCGACATCACGCTGGGCGGGCTGTTCCCGGTGCACTCCCGGGGCCCGGCGGGGCTTCCCTGCGGCGAGATCAAGAAGGAGAAGGGCATCCACCGCATGGAGGCCATGCTGTACGCCCTGGACCAGATCAACAGCGACCCCGAGCTGCTGCCCAACATCACGCTGGGCGCACGCATCCTGGACACCTGCTCCCGGGACACCTATGCGCTGGAGCAGTCGCTCACCTTTGTGCAGGCGCTCATCCAGAAGGACATCTCGGACGTGCGCTGCTCCAACGGCGAGCCACCGCTCATCCGCAAGCCAGAGAGGGTGGTGGGTGTCATCGGGGCGTCGGCCAGCTCCGTGTCCATCATGGTGGCCAACGTGCTGCGGCTCTTCGAGATCAGCTACGCCTCGACAGCCCCGGAGCTCAGCGACAACAACCGCTACGACTTCTTCTCACGTGTGGTGCCGCCCGACTCCTACCAGGCCCAGGCCATGGTGGACATCGTCAAAGCCATGGGCTGGAACTACGTGTCCACGCTGGCCTCCGAGGGCAACTACGGCGAGAGCGGTGTGGAGGCCTTCGTCCAGATCTCCCGCGAGGCCGGTACAGCCACGCCCACACCGCCACCCCCGTCCAACCCCCACCCAACCCCTCTGCCCCCTGTCCTCTTCCACTTGGTGCCATCCATACGCAACCCTACAGTTGACCAGTATCGCCCCAGCGGGCTGTGCATCGCCCAGTCCCTGAAGATCCCGAGGGAGCCCAAGCCGGGCGAGTTCGACAAGATCATCAAGCGGCTGATGGAGACATCCAACGCACGGGGCATCATCATCTTCGCCAACGAGGACGACATCAaGCGTGTCCTGGAGGCGGCAAAGAAGGCCAACCTGACGGGTCACTTCCTGTTCGTGGGCTCCGACAGCTGGGGTGCCAAGAGCTCACCCATCTTGGACCAGGAGGACGTGGCAGAGGGGGCCGTCACCATACTACCCAAAAGAGCCTCCATCGAGGGGTTCGACCAGTACTTCACCACGCGCTCCCTGGAGAACAACCGCAGGAACATCTGGTTTGCCGAATTCTGGGAAGACGACTTCAAGTGCAAGCTGACCAGGCCGGGCATCAAGCTGGACGATGGGAGGAAGAAATGCACAGGGGAGGAGAGGATCAGCAGAGACTCCGCGTATGAGCAGGAGGGGAAAGTGCAGTTCGTGATCGACGCTGTCTACGCCATGGCACACGCGCTGCACAGCATGCACCTGGACCTGTGCCCCGGCGCAGCCGGCGTGTGCGAGAAGATGGACCCGGTGGAGGGCAGGATGCTGCTGCAGTACATCCGCTCCGTCAACTTCAATGGCAGCGCAGGGACCGGGGTGATGTTCAACGAGAACGGAGACGCGCCGGGCCGCTACGACATCTTCCAGTACCAGCTGTCCAACACCACAGCTCCCGGGTACAGAGTCATCGGCCAGTGGACCAATCACCTGCGGCTCAACGTGGAGGAGATGCAGTGGTCTGGGGGGGAGCGCCAGGTGCCCGACTCGGTGTGCAGCTTCCCCTGCCAGCCGGGGGAGCGCAAGAAGATGGTGAAGGGGGTGCCCTGCTGCTGGCACTGCGAGCTGTGCGACGGCTACCAGCACCAGGCGGACGAGTTCAACTGCGAGACCTGCCCCTTCGACATGCGGCCCACCGAGAACCGCACGGCCTGCCGCCCCACGCCCATCATCAAGCTGGAGTGGCACTCCCCCTGGGCCATGCTGCCCATGTTCCTGGCCATCCTGGGCATCCTGGCCACCACCTTCGTCATCGTCACCTTTGTGCGCTACAACGACACGCCCATCGTGCGCGCCTCGGGCCGGGAGCTGAGCTACGTGCTGCTCACGGGCATCTTCCTCATCTACGCCATCACCTTCCTGATGATCGCCGAGCCGGGCGCCGTGGTCTGCGCCTTCCGCCGcctgctgctgggcctgggcATGTGCATCAGCTACGCCGCACTTCTCACCAAGACCAACCGCATCTACCGCATCTTCGAGCAGGGCAAGAAGTCCGTCACGCCGCCCCGCTTCATCAGCCCCACCTCCCAGCTGGCCATCACCTTCATCCTCATCTCTCTGCAGGTCCTGGGCGTGTTCGTGTGGTTCGGGGTGGTGCCCCCCCACACCATCATCGACTACGAGGAGCAGCGGCCGCCCGATCCCGAGCTGGCGCACATTTCTTTCACTTTCTATCTGTATTTCTTGTTGTCTCCTCTGCAGATGTACATCCAGACCATGACGCTGACCGTGTCGATGAGTCTGAGCGCCACGGTGTCTCTGGGCATGCTGTACATGCCCAAGGTCTACGTGATCCTGTTCCACCCCGAGCAGAACGTGCAGAAGCGCAAGCGCAGCTTCAAGTCGGTGGCGCAGGCCGCGACCATGTCCACCCGGCTCTCGCAGAAGTCCAACGACAAGCAGAATGGCGAGGCCAAGCCGGAGGAGAGCAAGGACACAGTGATATCCAGGCACTGTGACCCACCTATCATACGAgttcctgttctctctctctccctgcctttcATTCAAGATGCTTCTGTTACTCAGTCCGTttcatcacaaaataaaaacgctCCTCTTCcactctccttctctttctctctctctctcttctccatcTCTCATTATTTCTCCCTGTCTCCCAGAGATTCTCCTATACATCCATCCTTTGCAGCTGGTCTCATTAGTGCCCTAAAATGTATAATAAGGTGTCTTCTGTTCAGCACGGCTTTCCCTTTGTACGGGGGggagaaaaatgacaaaactaaAGAAGACGAGAGTCAGTGGGCAGCTGTTAACAGGGGTCGTTGCCTCCTGTCTGTGCGGAACGAGACAGATGCACATCTCTGCTCCCCAAGCGCCGGCGTCAAGTGGAAACTCGGCCAAGACGTCATCGCCTGCCTCTCGCTGCGTCTCATTAGCTCCTTCCCTGTCCCGCTTTCCAGAAACTGTCCTTATATCGCTGCCTCTCTCCCGTCCTTGCTTCCCCCCTCTGTCACCCACACTTATAATTCCGACTCAGTGTCAGATGCTGTGCAGGCCGGGCGTACTGTCAAAGCAGACAGGAAGAAACAGCGAGGGGAGCCCTGA

Function

GO:

id name namespace
GO:0007196 adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001642 group III metabotropic glutamate receptor activity molecular_function

KEGG:

id description
K04610 GRM8; metabotropic glutamate receptor 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73281 lncRNA upstream 96469 44759277 ~ 44760058 (+) False AMCG00009706
TU73169 lncRNA upstream 373280 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 448959 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 466445 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 496465 44328271 ~ 44360062 (+) True G58513
TU73337 lncRNA downstream 11120 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 36318 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 40359 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 261450 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 312798 45194523 ~ 45198264 (+) True G58792
AMCG00009709 mRNA upstream 75559 44768874 ~ 44780968 (+) True AMCG00009709
AMCG00009707 mRNA upstream 88299 44764036 ~ 44768228 (+) True AMCG00009707
AMCG00009706 mRNA upstream 96715 44750176 ~ 44759812 (+) True AMCG00009706
AMCG00009708 mRNA upstream 110198 44738679 ~ 44746329 (+) True AMCG00009708
AMCG00009711 mRNA upstream 144439 44709839 ~ 44712088 (+) True AMCG00009711
AMCG00009714 mRNA downstream 19701 44901426 ~ 44916843 (+) True AMCG00009714
AMCG00009715 mRNA downstream 46142 44927867 ~ 44933814 (+) True AMCG00009715
AMCG00009716 mRNA downstream 68948 44950673 ~ 44962284 (+) True AMCG00009716
AMCG00009719 mRNA downstream 85154 44966879 ~ 44969079 (+) True AMCG00009719
AMCG00009722 mRNA downstream 93935 44975660 ~ 44984837 (+) True AMCG00009722
TU73251 other upstream 204560 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 257199 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 285996 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 468563 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 920765 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 174340 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 626469 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 678252 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 872861 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006833 True 2733 mRNA 0.52 10 NC_007122.7 25638228 ~ 25675690 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_08878920_08926849.mRNA True 3844 mRNA 0.50 12 CI01000010 8878829 ~ 8927698 (-)