RNA id: TU166218



Basic Information


Item Value
RNA id TU166218
length 811
RNA type TUCP
GC content 0.53
exon number 3
gene id AMCG00011771
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3903675 ~ 3977662 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tatttattttcctttctacACCCCTCCACACACATGGTTTGGACAATTGAACACAATATCTCACAGGCTTGAAAACAGAAGGTTTAATGGAATCTCACACACAGCAGGGCCACTCCAGGGGACAGtcagcctccctccctctctctctgtctgtctgtccctccatCACCCTGTCCTCCACACAGTGTAGGCCAGAGTGGCAGGAACACAGGGAGGGGTCAGTCTGTCCAGGATCTACAGCCTGGCTACAGTCGGTTGCGTCTCTTCAGCAGGGGACTGTgggtaacagtgtgtgtgtaggctgGGATCCTGGTTAgtccagtgtgtttgtgtgagagacgATTCTACAactctgtggttttatttgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtttactgcaGCTGTTGATGCCTCATGTGAGCACCACTCTGCAGATCAACATCCAGGCGCGGGCCTCTCTCCTGTCAGCAGGGGGTGTCTTCGACAGGTCCATCGCCTGCGGTCTGCAGGGGGTGCCCGCGTTGCTGCGCAGAGCCACCGAGCGCCTGCACTACAGCAGCCTCTGTCTGCCGGAGGACGTGCAGCAGCGAGGGCTGGACACTGTGCCAACGTGCTACTTTGCTCGGGACGGGCTGAGAGTCTGGAACGCCATACAcaggtacagagagagagagagtgagtgagtgagttagtttacaaatgagagtaggccattcgacccattgtattcatttggtgtccattaattactACGTtttccaaggatactatccagtctgttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU166215 lncRNA upstream 6079 3896554 ~ 3897596 (+) True AMCG00011770
TU166175 lncRNA upstream 62201 3841232 ~ 3841474 (+) True G132518
TU166164 lncRNA upstream 81362 3800311 ~ 3822313 (+) True G132510
TU166161 lncRNA upstream 111174 3792229 ~ 3792501 (+) True G132508
TU166159 lncRNA upstream 115235 3788227 ~ 3788440 (+) True G132506
TU166241 lncRNA downstream 52035 3990427 ~ 3995729 (+) True G132573
TU166243 lncRNA downstream 53872 3992264 ~ 3992904 (+) True G132574
TU166255 lncRNA downstream 77735 4016127 ~ 4017756 (+) True G132586
TU166266 lncRNA downstream 171121 4109513 ~ 4111930 (+) True G132596
TU166337 lncRNA downstream 280155 4218547 ~ 4218983 (+) True G132655
AMCG00011770 mRNA upstream 6940 3893712 ~ 3896735 (+) False AMCG00011770
AMCG00011761 mRNA upstream 14617 3882625 ~ 3889058 (+) True AMCG00011761
AMCG00011762 mRNA upstream 34394 3855409 ~ 3869281 (+) True AMCG00011762
AMCG00011759 mRNA upstream 236126 3661364 ~ 3667549 (+) True AMCG00011759
AMCG00011755 mRNA upstream 412120 3484762 ~ 3491555 (+) True AMCG00011755
AMCG00011776 mRNA downstream 9010 3947402 ~ 3965183 (+) True AMCG00011776
AMCG00011777 mRNA downstream 31928 3970320 ~ 3975139 (+) True AMCG00011777
AMCG00011782 mRNA downstream 226441 4164833 ~ 4172677 (+) True AMCG00011782
AMCG00011781 mRNA downstream 237043 4175435 ~ 4181132 (+) True AMCG00011781
AMCG00011785 mRNA downstream 304780 4243172 ~ 4249417 (+) True AMCG00011785
TU166214 other upstream 7496 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 699078 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 899013 3001432 ~ 3004662 (+) True G132221
TU165616 other upstream 962504 2938370 ~ 2941171 (+) True G132072
TU165599 other upstream 1023415 2877274 ~ 2880260 (+) True G132058
TU166232 other downstream 3541 3941933 ~ 3943362 (+) False AMCG00011771
TU166792 other downstream 1821466 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1890409 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 1948613 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 1948613 5887005 ~ 5887892 (+) False AMCG00011837

Expression Profile