RNA id: AMCG00012598


Basic Information

Item Value
RNA id AMCG00012598
length 2798
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00012598
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 24216367 ~ 24222350 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGATTTTGAGGCCTTCGTGAAGAAGTTTGCTCTCCAGCGTGCCCTTGACGCAGAGGCCCCCAAGCAACCGCTGCAGGAGAAGATGGTGGCTTTCTCCGACGTGGCCCACCCAGACGACTTCTGTTTGTGGTGTGTTTGTTACTTGCAGAGGGACCACCGGGATGTCTTGGCAGCTCTGGAAATTTTGTACAGGACAGATGTGCAACCAGATCTCATATGGCTGACCTTTTTGGGACGTCTGTCACGAGCAAATGTAGTGGCTGCCATGGCTGCCCTGACACCCATGCTGTGCCCTGCGACTCTCGGGGCCAGACTGAGCGGGCTGATCAGCACCACAGTGGCGCTGTACAAACGCAGCTCCAATGGTGAAGTCCTGGTCCAGAACGTGCACTACATCGTCCTGGCGGCCTTGGGCTCGGACCGGAATATAATCCGCTCCTCCATGGACGTCCTGCTGAGGAGCTTGCACCAGGAGGCAGGTCAGGCCCTGCTCTGTGTAGCCGACTCTGTGCAGTGGAGCGACGCCTCCCCCTGGGTATGCAGTGACCGCATCTTTCTCCTTCAGGCCCGTGCCCGTCTCCTTCAGATGTGCATCCGTCGGGAGAGCCAGCTGCCTGTGGACGAGCACAGCGTGTTCCTGAGCCCCATCCCACTCCTCGGTACGTCTCTCTTCTTTCACTCGGGAGAGGGTCCTGGTTCTGATCCGCTGGCCTGTGTCGTGACCTCACTGCTCTGTGCTGCCTGCCTTATTCCCACAGCAACCGCCTTCCCAAAGATGGTTTCCAGATTCATTATTCAGCAGGTGACAAGCGTCAGTGAGCCGAGCCGGGCTGTGTCCGGGCTGATTCTTGCCCTCCTCCTCAGAAATGCAGGACTGCAGCTCCATCTGCTTTCATGTCCTGGAAGCCCGTCGAGCCGAGCTGACGAGGTCTCCGAGATCCTGGActcactgcagccctgcctgcTCCACCTGACTGACCCGCAGGTGAGAGTGGTCGTCCGCCTCGTGTCTGGGCGCCCGGAGGTGCTCGCCGTGACGCTGCTAAGCCAAGCCCTGCTGCTGGACAGCTCCAGCTGTGCGCTGTGGAGGGCCATGGGAGCCTGCGGGTGTGACCTGTGCTGTGCAGGAGCTGCTAGCCACCCCAGGGGGGAAGGGGCCCTTTCAGAGGGTCTTTCCCCAACTATTTGGGGCCCTCCTTCTGCAGACCCCAGCAATGAGGTGACCCAGGCCTGCCTCCTGACCTTGAACAACAGTGGGTCAGCGCCAGAACTGAGCACCATCAGGAGGCTCATCTCAAAGAACCAGGAGGAAGGGGTTTTGGACTTTCGTGCCTTCCTGGATGACCTTGCATTCTGGGCGTCTGATTTCCCTGAGGCCCTGGACTGGTCCTTCAGCTGTGCCCTGTACTGCCTGAGCAGCTGCTTTCCTGGAGTCAGAGGCAGTGCCGCCGTCTTTACAGAGTCCCTGATTAAAAACGTCCCGCAATCCCTCCTCAGTCGTCGATGGGTGGATCAGAGCGTCGGAGGTAATGCAGCCCTTGAGTGCGTCAATTCTtattgtaggtcacttgatgtcatcctttGGTTGTCGAGTggcattcgaatgagttggcagtcatcccggtcagtggacaGTCGTTTTCGTCCTCTGccagtctgtagctttgttgtccccaatgtctgctgcttgaccttgttcttatgaactgcCGTCTTTGAAATTGTAAGGATGGAAGCCACCCgatgctcactgtatccctctgccagtaaagccagaattgaacccatcttttcctcactcagaactttccttttcaactgttttggcatggtcaatagttatttttttattccagttgCCTTTGAGGCACTAGCACTGTTTTtaccatccagctggtcctattgcaagaggatagtgatgaccacagcagtggtttttatattcctcgttaaataagatttggttcaggtgatcacctaatcagtagctcattcagtagacactggaatggaatggctgccatatatgtagagatgctgatttaagaaaaaattgcagtggtctcttttttccagagctctaTATTGTGGCTGTCTTTGTGTAAGATCTGCTCTGTTTCCAGATCCTGGGGGTGACAGTTCAGATAAATGTTCAATTTAGTACCGACTGCTGGTTTAGtacctgctggtttttgttccagccgagctcgAAAGACAGTTTCAGTTGTGTACCCAATTCTCCTCCCATTCAATGGCTAGTCTGCTCTGCAAGACACAAGGGGTTTACCCGCATAAGAGACCACTGTGGCAACAAACCTGTTTCCAGATGTGTCTGTGCCACAATCTGCCCCTTCAACAGTGTCTTCCCAACCACTGCATCAGTGGTGTCTGCCATGCAGACatcagccccccccaccccaacacatCCCACAACAAGGAAGAGCCAAGACACCTGGTGGAAATATAGAAGGGACGTTCCTGACTGAACAGGCAGACCAAGTCTGCAAAAAGGACCAGGCTGCTGGAAACCCTCACAGAAACTAATGAATGGTGACGGCAAGAGAGGGAAGATAGCTGTCGGGAATCCaagcagagggagaggagaagagaatgCAGGGAAACTGAATTGCTGAAGGAAATGAAAGCTGTCTCTGCAAATCGGGACTGAATTATTGAACTGTTAAAAAGAATTGAGGAAAAGCAGTGATATTAGTCCTGTTTATTGGCTGGGGAGGattgttatgtttctttttaactcAGTTTCATTTTGCATGCTTTGTtccatcaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173721 lncRNA upstream 294498 23920076 ~ 23921869 (+) True G138118
TU173617 lncRNA upstream 373156 23804627 ~ 23843211 (+) False G138042
TU173839 lncRNA downstream 14312 24236662 ~ 24236977 (+) True G138209
TU173842 lncRNA downstream 18789 24241139 ~ 24241424 (+) True G138212
AMCG00012599 mRNA upstream 146916 24043955 ~ 24069451 (+) True AMCG00012599
AMCG00012596 mRNA upstream 239798 23952192 ~ 23976569 (+) True AMCG00012596
AMCG00012595 mRNA upstream 317030 23859829 ~ 23899337 (+) True AMCG00012595
AMCG00012593 mRNA upstream 506297 23697424 ~ 23710070 (+) True AMCG00012593
AMCG00012592 mRNA upstream 526826 23663228 ~ 23689541 (+) True AMCG00012592
TU173653 other upstream 473776 23709518 ~ 23742591 (+) False AMCG00012593
TU173480 other upstream 1328311 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 1397909 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 1650261 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 2258209 21932295 ~ 21958158 (+) True G137775

Expression Profile