RNA id: AMCG00013843


Basic Information

Item Value
RNA id AMCG00013843
length 3675
RNA type mRNA
GC content 0.55
exon number 18
gene id AMCG00013843
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45359187 ~ 45373711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTTTCATGAGCGCAGTGAAGGTGGCTCGAATGCCGAGCTGATACGGATCTCGACGGTTTCCTGCTGCTGCGATCGGTCGCCAATGCCGGAGCTCGACCAATCCGGCTCTGGGAAGGTCATCCGAGTCTATTGTTTGTTAAGTGCCGGGCTGCGATCAGTCGAATCCCGATCGATGGGTGCCCTGGCGGAAATTCTGCACTCCATCTCCACGCTAAATCCCTCTCTGACCCATATATATAGAGCGCAGCAGCGCCGGATGGGTGACAAGACTTCAAAGCCGGAGCCTCATCCCAGGGGTTCCTCCCAGGCACCCGAGTCCCAGCTCCCAGAACAAGAGGAGGAGATCCTGGGCTCTGACGACGAGGAGCAGGAAGACCCCAACGACTACTGCAAGGGTGGCTATCATCATGTTAAGATCGGGGACCTGTTCAACGGCCGGTACCACGTCATTCGGAAGCTGGGCTGGGGCCACTTCTCCACCGTGTGGCTGGCCTGGGACATCCAGGGCAAGCGCTTCGTGGCCATGAAGGTGGTGAAGAGCGCCGAGCACTACACGGAGACGGCGCTGGACGAGATCAAGCTGCTGAGATCGGTCAGAAACACGGACCCCAACGACCCCAACCGGGAGATGGTCGTCCAGCTGCTCGACGACTTCAAGATCTCTGGCGTGAACGGGACTCACGTGTGCATGGTATTCGAGGTCCTGGGACACCATCTGCTCAAGTGGATCATCAAGTCCAACTACCAAGGGCTGCCGCTGCCCTGCGTCAAGAGCATCATCCGACAGGTCCTTCAGGGGCTGGACTACTTGCACACCAAGTGTAAGATCATCCACACAGACATCAAGCCCGAGAACATCCTGATGTGTGTGAATGAGCCGTACGTGCGTCGCCTGGCCGCCGAGGCCACCGAGTGGCAGAAGGCCGGGGCACCCCCCCCCTCCGGCTCTGCAGTCAGCACCGCGCCACAACCCAAGCCGacgGTGAAGATGTccaagaacaagaagaagaagctgaagaagaagcagaagaggCAGGCGGAGCTGCTGGAGAGACGCATcctggagctggaggagctggagcgcGGCCCTGAGGGTGgcgaggaggacgaggaggacgaCGGCCCGGAGCCGGACACCCCCGTGGCCCCGCCCTGCGTCCCGCTCCAGCCGGCCACGCTGCAGGACGTGGCGGACGAGCAGAGTGCCGAGGGCGGCGGGCAGCGGGAGCCGGAGGGGCCGGCGGAGGAGGTGGCGCGCGGCGAGGCAAACTGTAACGGGCACAATGGCGGCGAGCGTCCCTCCCccgaggaggaagaggacgaggacgaggaagaggaggacgagAGGAGAACCACCAGGAAAGACGACGATGACCACCACAACGCCAACGACTGTGTGCCGGAGGACCTGTACCCGCCGAGCCAGGGCCTGCTGCTCAACCCCGCCTACCAGACGTGCAACGGCACAGTGCAGGGCGACTCGCCAACGGGCAGTGACGGTAATGGACCCTTCCTTAGTGGCATGCTTCAGTCCATGTCCTGTAGCTTGCAGTCCGAGGGGCTCGACGCCAAGGAGGACGAGGACGGCATCGGGCGGGCGCAGGACGGCTCCGACATCCCGACGGGCCTCGAGGGAGACATGGCTAAGCTGGCCGCTGGAAATCTGCTGATCAACCCTTTAGAGCCGCTGAACGCCGACAAGATCAAAGTGAAGATCGCAGACCTGGGGAACGCCTGCTGGGTTCACAAGCACTTCACAGAAGACATCCAGACCAGACAGTACCGGTCGCTGGAGGTGCTGATCGGGGCCGGGTACAGCACGCCCGCCGACATCTGGAGTACAGCATGCATGGCGTTTGAACTGGCGACTGGGGATTACTTGTTTGAGCCTCATTCTGGGGAGGATTACTCGAGAGATGAAGacCACCTGGCCCTTATTATAGAGCTTATGGGCAAAGCCCCACGACACCTTGCTTTGTGTGGGAAATACTCACAGGAATACTTCACCCGCAGAGATCACATTGCGTTGATCATTGAATTGCTGGGGAAAGTGCCTCGCAAGCTCATTACAGCCGGCAAGTACTCCAAGGAGTTTTTCACCAAGAAAGGAGACCTGAGGCACATCACCAAGCTGAAGCCCTGGGGGCTGCTGGAGGTGCTGGTGGAGAAGTACGAGTGGCAGCGCGACGAGGCCCAGACCTTCGCCGACTTCCTGCTGCCCATGCTGGAGCTCGTCCCGGAGAAGAGGGCCACGGCGGCCGAGTGTCTGCGCCATGCCTGGACCGCCCCCTAGTGGACCCGCCCGGCCGGCCGACCCACCATCCATCCGCCTGCCAGTCTGCCCACCctatcctcctcctccttctcctctctctccttcctcttcctcctcctccctcagaCCAGGCAACCCTGCGCGGCTCGCTcgcaaaaacacaaactgcgTACCTGCTCCCACCCAACGACCCGCCGACTCGGCCAGCTGGCGACGCCATTCCAGTGTGAAGCTCGATCGCGGCGCCCCCCCGCGAGGAAGAGCGGTCCAATCTAGCagattcaatatttatttcctgtttgtttgttttgtgtctgtttgttttgttacttacTGGATATTACTTGAGTATCTGAGCTGTCCGTCTTCCCTCTCCCTGTTCAAGTCTCTTCTGTAGCCGCGGACCGGGGGCTTCGCGCCTCTTGATGGGGGGGCGTCCGTGTTCTCTGGGACACAAGTTATTCCAAGTCCCCGGTGAAACCTTCCactttctctctgtctatcggtctctctttctcttgatCCCCTTGTCATATCAGTTGCTCCCAAGGACAagatttgcatttcattaaataaaacccAGTAATTATTGCTGCTGAGCTATTCGAGGTATTTAAGAATAGTAATCGTATCTGTGAGTGTGGCAAGaggtatattttgtatttcgtGGTTCCCCGaattattttctactttttttttgcagctgtACTGAAGTTTGataatcaaattacttttggGTCTGATCGCTTCACATCGGCAGCAGTAATTCCTGGAGtaggaataaaatgttttttattttttctttctattcaaAATGAATTGTAGAGCCAGATCTAATCAAGTCGCCTAAGACACTGTTAATGTTCGGATACCTACTACTTTGTGCCTCTCTGCAAGCAAGATGTCCGTGGAATTTCAGAAGCCTGGGGAGTTCTATATTTGATCCTTCAGAATGCTGACCCTTGACCCCGGGCTCTTCTGCATTCCGATTCCCAGACCTCCAGGAGGGATCATGAGAGTCCATGCgttcagtgtattttatttttattttgtatttggcaGTACATAGGCATCTACTAAAGCATCACATTAAAGTCTGTCAAGatatttcatctttaattatatatgtgtatgtatatattttagtttttctgtcttGCCTGGGTGCGAGTATAAAATCTTTTGAACTTCCCCCCCCGCCACAGCGATGGAAAGAAAGCGTCCGTCTCTGACCGGCGCCGGCCAGAAACGTGGAAGCGAAGGAGGCGAATTTGAAACAGAAGATTGagagatatacatatataaatatatatatatatactcgtACCAAAGAGTTGGCCTTGTTCTGTATATTACAGCCatgtacagtttaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K15409 SRPK1; serine/threonine-protein kinase SRPK1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58873 lncRNA downstream 15172 45343301 ~ 45344015 (-) False AMCG00013846
TU58833 lncRNA downstream 90791 45268054 ~ 45268396 (-) True G47185
TU58826 lncRNA downstream 254300 45104223 ~ 45104887 (-) True G47180
TU58812 lncRNA downstream 392259 44966010 ~ 44966928 (-) True G47168
TU58806 lncRNA downstream 395707 44961849 ~ 44963480 (-) True G47162
TU58925 lncRNA upstream 248804 45622515 ~ 45622755 (-) True G47259
TU59047 lncRNA upstream 452012 45825723 ~ 45826654 (-) True G47358
TU59048 lncRNA upstream 454254 45827965 ~ 45828251 (-) True G47359
TU59058 lncRNA upstream 472138 45845849 ~ 45854800 (-) True G47365
TU59095 lncRNA upstream 547395 45921106 ~ 45922914 (-) True G47391
AMCG00013846 mRNA downstream 15587 45338859 ~ 45343600 (-) True AMCG00013846
AMCG00013845 mRNA downstream 30008 45316447 ~ 45329179 (-) True AMCG00013845
AMCG00013847 mRNA downstream 43486 45315172 ~ 45315701 (-) True AMCG00013847
AMCG00013844 mRNA downstream 44362 45295506 ~ 45314825 (-) True AMCG00013844
AMCG00013842 mRNA downstream 70585 45279776 ~ 45288602 (-) True AMCG00013842
AMCG00013856 mRNA upstream 231115 45604826 ~ 45615255 (-) True AMCG00013856
AMCG00013859 mRNA upstream 242424 45616135 ~ 45621865 (-) True AMCG00013859
AMCG00013861 mRNA upstream 263217 45636928 ~ 45638791 (-) True AMCG00013861
AMCG00013857 mRNA upstream 266119 45639830 ~ 45647135 (-) True AMCG00013857
AMCG00013858 mRNA upstream 291169 45664880 ~ 45668281 (-) True AMCG00013858
TU58280 other downstream 2658119 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 4750659 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 4771795 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 4930562 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 5084089 40273391 ~ 40275098 (-) True G46333
TU58927 other upstream 249527 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 550211 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 590180 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 701718 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 786828 46160539 ~ 46163487 (-) True G47501

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048177 True 483 mRNA 0.52 5 NC_007136.7 222921 ~ 225964 (-)
grasscarp (Ctenopharyngodon idella) CI01000256_00042139_00049433.mRNA True 3779 mRNA 0.49 14 CI01000256 41383 ~ 50689 (+)