RNA id: AMCG00013846


Basic Information

Item Value
RNA id AMCG00013846
length 696
RNA type mRNA
GC content 0.70
exon number 3
gene id AMCG00013846
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45338859 ~ 45344015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTCCTCCAGACCTTGTACGGAACCTACTACCGCTGCACCTGTGAGAGCGGCCTGAAGTGCGACGTGGACATTTCCATCGGCGGCTCCATCACCAACACCAACTTCGGGATCTGCGTGGACCCCACTCCAGCGATAGCGCATGCGCCGAGAGCACCCCCCGCCGGCGCCGCGCAGAGGCTCGTCCCCGCTGCTCCCGCGAGAGGCGCGACTTTGCGGCGGCGGGCGGGCGCGCGCAGCGGGGGCGCGCCGGCCTCGCTCTCAGTCGCGACAGTGCGGGATCCAGCGCCAGCGCGCGAGCTGCGGACAGCGGTGCGGGAGTCGCGCGGGGCTGCAGCGATGTCGCACGACAGACCCACCTTCTACCGGCAGGAGCTCAACAAGACCATCTGGGAGGTCCCGGAGCGGTACCAGAGCCTGTCCCCGGTGGGGTCCGGGGCCTACGGATCAGTGTGCCAGGCCCGTCCGCGGAGAGGCGGAGAGGGGGACCGGGGGACCGGGGGACCGGGCTCTCACGCCGCCGCCTCTTTCTATCTCAAGCTGCGCAAACAAGAGCCTCCCTCTCCTGCCGTCGGTCTGTGGTCGGCGGCCGGGCGGCTCTGCATCGTGCAGTGTTTCCCCAAATCCCGCTCCTTCGTGCGCGGTGCAGCGGCGCTGCGGTCTCTGCTGCCTGGCGTGCAGGCGCGACGGTGA

Function

GO:

id name namespace
GO:0038066 p38MAPK cascade biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006468 protein phosphorylation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0010831 positive regulation of myotube differentiation biological_process
GO:1901741 positive regulation of myoblast fusion biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58833 lncRNA downstream 70463 45268054 ~ 45268396 (-) True G47185
TU58826 lncRNA downstream 233972 45104223 ~ 45104887 (-) True G47180
TU58812 lncRNA downstream 371931 44966010 ~ 44966928 (-) True G47168
TU58806 lncRNA downstream 375379 44961849 ~ 44963480 (-) True G47162
TU58794 lncRNA downstream 528983 44809645 ~ 44809876 (-) True G47153
TU58925 lncRNA upstream 278915 45622515 ~ 45622755 (-) True G47259
TU59047 lncRNA upstream 482123 45825723 ~ 45826654 (-) True G47358
TU59048 lncRNA upstream 484365 45827965 ~ 45828251 (-) True G47359
TU59058 lncRNA upstream 502249 45845849 ~ 45854800 (-) True G47365
TU59095 lncRNA upstream 577506 45921106 ~ 45922914 (-) True G47391
AMCG00013845 mRNA downstream 9680 45316447 ~ 45329179 (-) True AMCG00013845
AMCG00013847 mRNA downstream 23158 45315172 ~ 45315701 (-) True AMCG00013847
AMCG00013844 mRNA downstream 24034 45295506 ~ 45314825 (-) True AMCG00013844
AMCG00013842 mRNA downstream 50257 45279776 ~ 45288602 (-) True AMCG00013842
AMCG00013836 mRNA downstream 605114 44730857 ~ 44733745 (-) True AMCG00013836
AMCG00013843 mRNA upstream 15587 45359187 ~ 45373711 (-) True AMCG00013843
AMCG00013856 mRNA upstream 261226 45604826 ~ 45615255 (-) True AMCG00013856
AMCG00013859 mRNA upstream 272535 45616135 ~ 45621865 (-) True AMCG00013859
AMCG00013861 mRNA upstream 293328 45636928 ~ 45638791 (-) True AMCG00013861
AMCG00013857 mRNA upstream 296230 45639830 ~ 45647135 (-) True AMCG00013857
TU58280 other downstream 2637791 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 4730331 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 4751467 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 4910234 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 5063761 40273391 ~ 40275098 (-) True G46333
TU58927 other upstream 279638 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 580322 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 620291 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 731829 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 816939 46160539 ~ 46163487 (-) True G47501

Expression Profile