RNA id: AMCG00013857


Basic Information

Item Value
RNA id AMCG00013857
length 3269
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00013857
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45639830 ~ 45647135 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGTCTAAGGTCCGTCTCAGTTGTTACTCAATAGGTGTGTCTGCCTGGAACCAGTGACGTCACCGACATACCTGCGTTTCACAGAAAAGGGGAGGATAAattgggagaggaaaaaaaaacaaaattcgTAAACAGAAACTCTGGATTTCCTTGAAACCGGTGTGAGGAGAGATATTCGAGTTCAATAGGAGATTGACTGTTTTTGTGGTTGGAGTTGTAAGGAAAAGGCCACCAAGAGATCGGCGAGGAAGGACTTGTTTAGGAGGCGGCGGCCCAACTTTTTACCACTGAGAAACTTCCTGGTCAGCAGTGACTGCAGGCTATGGCCGTGCACCCCAGGCGAGTGCGGCTCAAGCCCTGGCTGGTGTCCCAGGTGGACAGCGGTCTGTACCCGGGCCTGGTGTGGCTGGACAGGGAGGTCAAGCGCTTCCAGATCCCGTGGAAACATGCCACCCGCCACTCGCCCCAGCACGAGGAGGAGAACACCATCTTTAAGGCCTGGGCCGTGGAGACGGGGAAGTTCCAGGAGGGGGTGGACGAGCCCGACCCTGCCAAGTGGAAAGCCCAGCTGCGCTGCGCCCTCAACAAGAGCCGGGAGTTCAATCTGATCTACGACGGCACCAAGGAGGTTCCCATGAACCCGCTAAAGATCTACGATGTGTGTGACATCCCCCAGCCGCTCAGCAACCCAGGATCCACGGGCTCTGTTCCCTGGGAGGAGAATGATGGCGAGccggaggaagaggaggaggagtcgCTGGAGCCCAGTCCGTACCCACAGATTAATGGCATTGgaTCGGTGTCTCCTATCCAGCCGGCCAGCTGCCCCTCCGTGGAAGTGTGGCCGAAGGAGGAGGTCATCGACATCGAGATGCACCCGTCCCCCCTGCCAGAAACCATGTTTACATCCCCAGAGATGTGGATCAGCTCCCTGCCAATGACTGACCTGGAGGTGCAGTTCCAGTACCGTGGTAAGGAGGTGTGTCCACCCCTGACGGTCAGCAATCCCCAGGGCTGTCGGCTGTTCTACGGGGACCTGGGCCCCATGGTCAACCAGGAGGAGCTGTTCGGGCCCATCAGCCTGGAGCAGGTGCGCTTCCCCTCCACGGAGAACATCAGCAACGAGAAGCAACGGCTCTTCACCAACCGGCTGCTGGACGTCATGGACCGTGGGCTGATCCTGGAGGTCAGCGGCCACGACATCTACGCTGTGCGCCTGTGCCAGTGCAAGGTGTACTGGTCGGGCCCCTGCGCCCCCAACCCCACGGGCGCCAACCTCATCGAGCGGCAGAGGAAGGTCAAGCTCTTCTGCCTGGAGACCTTCCTCAGTGGAGTGATTGCCCACCAGAAAGGTCAGACCATGGACAGACCTCCCCAGTTCGAGATCCATCTATGCTTTGGGGAGGAGTGGCCGGATGGCAGGCCCAGGGAGAGGAAGCTCATCATGGTGCAGGTGATTCCCGTGGTGGCCCGCATGATCTACGAGATGTTCTCCGGCGACTTCACGCGCTCCTTCGACAGCGGCAGTGTGCGCCTGCAGATCTCTACGCCTGACATCAAGGACAACATCGTGGCGCACCTGAAGCAGCTGTACCGCCTCCTACAAACACACCAGCCCCACGACGGTTGGCTGCCCCCTCAGGCCAACGTGCACCTGTCCCAGGCCCTGCACGCACAGTAGCGCCCTCACTGACCCACGAACTGACAGTTCCCCTTCCGCCAATGAGCAAttccccaacacacacacacacacagacaaaacaggCTTAAACCAGTGACGTCCAGGTGTAGAGgtgagggacagacagacagactgacggAGGGGAAGAGCAGATTGATGAAAAATCTGAGTGGTCATAACCAACCACAGTCGTATACGGGAGAGCactgatacatacatacatacatacatacatgcatacatgcattcATGTAGCTCGGTTAGAccgacacagagacagacatgcAGCTGGATTTTGGGCTACTAACTCTAGGCACAAATCCAACAATCCGGAGAATCGCACACACATCAGACTCTCGCACctggatgtttttaaaatacttttaaatagttACCAACCTTTCAGTTTCCCTCAAATGCTTTAGAACTcgagtgtttttaaattataaccgTTGTTTTCCCCTCTTGGGGCGATTGATGTATGTCCAGAGAATGTATAGTGAATTTGTTGCTTAAATTTCTCTTTTGATACAACAATATGAAGTCCTTTCTTTTATATCATTTTCTGCAACGTATTTTTTTTGTGAGATGTAGCAAAACATGTGGCTGTACCCCTTGAGCAGAGGACGGAGTCGGGTTTATAGTGGGCAGGACATGGTGTTGAACCAAGagatgtgattttattttattttttgtaatcccAAAGTATGTACTGTACCTGATTGTTTTTTATCATGAGACAGTCTCTGTATGACTACAATTGAtgataataatttgtattattattgtagtttttgttaTGGTGATAAATCCTGCCAATGTACATTATGGGCCTGGTTTTCCAGGGTTGGTAAACATACTAATAAGTGAGATCCACAGTTTGAATaaagtttatttacttatggGGCCTCTTATCAAGCATTTTGAGTGACATGGATGTTACGCTAACGCTAATAatcatgcatacacacatactgactGTAGTCATTTGCAAATTCTTTACTTTGAAAAATCAGGCCCTATATAACCAAATCCATTTTGTCAACAGACAAGTACAAAAAGGCAGCTGTTTGGTGTATTTGAAAGGGTGTCGACCCACTGTTACCCTCAGTGACTTCTGCAATGCAACCATGCTATGGTTTAGGGGTCTTCACGATTGGCTGTTCCAGTtgatcccagaggtgttctgaGAGATTGAGGTCCAGACTCTGAATAGGCCATGGAATGGGTTCAGTGCTATCCCTCTCGAACACCTGGCTTTTGCAGAGCACAGTCTGAGGTGTGATCCACTAGCACATGTTATGtgataacacatttgttttggccCCCAACTATTTCTAGGTGTAATTTCTGCTGTAGTGGAGTAGGTGGTGTTCATGATATTCGATAATGACATTGTGAGTTCAATTTGTGGACTCTTGTACATTGGCCAGGTATCTTATAATGTGGCGCTCGCTGTGTTTCTCTGGGGATTGATTATGTGTTCTATTATATTCTGTTATTCTATTATATTATAGCCTGTTGAGTAAACCTTTTTGTAAAGATAAGAGATCTCTTCttctattaataaataatattttacctA

Function

GO:

id name namespace
GO:0060429 epithelium development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process

KEGG:

id description
K10154 IRF6; interferon regulatory factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58925 lncRNA downstream 17075 45622515 ~ 45622755 (-) True G47259
TU58873 lncRNA downstream 295815 45343301 ~ 45344015 (-) False AMCG00013846
TU58833 lncRNA downstream 371434 45268054 ~ 45268396 (-) True G47185
TU58826 lncRNA downstream 534943 45104223 ~ 45104887 (-) True G47180
TU58812 lncRNA downstream 672902 44966010 ~ 44966928 (-) True G47168
TU59047 lncRNA upstream 178588 45825723 ~ 45826654 (-) True G47358
TU59048 lncRNA upstream 180830 45827965 ~ 45828251 (-) True G47359
TU59058 lncRNA upstream 198714 45845849 ~ 45854800 (-) True G47365
TU59095 lncRNA upstream 273971 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA upstream 273971 45921106 ~ 45922870 (-) False G47391
AMCG00013861 mRNA downstream 1039 45636928 ~ 45638791 (-) True AMCG00013861
AMCG00013859 mRNA downstream 17965 45616135 ~ 45621865 (-) True AMCG00013859
AMCG00013856 mRNA downstream 24575 45604826 ~ 45615255 (-) True AMCG00013856
AMCG00013843 mRNA downstream 266119 45359187 ~ 45373711 (-) True AMCG00013843
AMCG00013846 mRNA downstream 296230 45338859 ~ 45343600 (-) True AMCG00013846
AMCG00013858 mRNA upstream 17745 45664880 ~ 45668281 (-) True AMCG00013858
AMCG00013860 mRNA upstream 28121 45675256 ~ 45682090 (-) True AMCG00013860
AMCG00013864 mRNA upstream 48500 45695635 ~ 45702773 (-) True AMCG00013864
AMCG00013867 mRNA upstream 64956 45712091 ~ 45712579 (-) True AMCG00013867
AMCG00013866 mRNA upstream 96644 45743779 ~ 45752588 (-) True AMCG00013866
TU58927 other downstream 15935 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 2938762 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5031302 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 5052438 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 5211205 40386061 ~ 40428625 (-) True AMCG00013730
TU59115 other upstream 276787 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 316756 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 428294 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 513404 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 1224734 46871869 ~ 46875370 (-) True G47666

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039773 True 2746 mRNA 0.51 8 NC_007133.7 1170295 ~ 1182165 (+)
grasscarp (Ctenopharyngodon idella) CI01000185_00015550_00020227.mRNA True 1852 mRNA 0.55 7 CI01000185 15126 ~ 20227 (-)