RNA id: AMCG00013875


Basic Information

Item Value
RNA id AMCG00013875
length 903
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00013875
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45805431 ~ 45806333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGTAGAGGGTTTTCCCTGTGGTGGCTCTTTCTCATCCTGACATCCTGGTTCCTTCTGTGCCATGCTGCCCTGTGCGCCGTCACCCTCCCGCCCGTCGCTCTGGAGGAGCTGGCGTCCATCACGGCCCCAGTGGTGGTGCGCAGCTCACCCTGCAGTGCCACGTGCGGCCTAGGGCTGAGGACGGAGGAGGTGTGCCTGCTGGCGGGCGACAGGAGGACGGAGGCCTGCAAGGAGAGGAAGGCTGAGTGTTTGGTCGAATGGGACTGTGGCCTGAGACCCGTCACCGTGATGGCGGGAGAGGCACGGGAGCTGGACTGCCTGGGCGAGGTCATGGCGGCGATGGGTCGGTTCAAGTTTCTCTTCTCCTGGAGGTACGCCCGGGGCATTGTCACCACCGACAACTCGTTCTTCAGCCGCTACGAAGTGCCCCGGCTGGACAAGCTGGCATTGGAGCCGGTGAGGGAGATGGATGCCGGGACGTACCGCTGTGACGTGAAGGACAGCGACTACAGGATGGTCAAGAGAGTCTACTTTGGGGTCAAGGTTCTGCCGCCGAAGGCGATCCAGCTGGACTACGCGAGCGCTCTCTCCCGGTGGGACAACCAACCCACCAGTGGGTCCAACAGTACCGCCACGCCCACCATTCTCCGTCCGTCCCTCACCCTGTTTCAGATCGTGGTCTACAGCCTGGCCATCTCTTCTGGAGTGACTGTGTTGGCTTTCCTGGCACTTTACTGCATCTTTTGGAAGAAAAGCGATGGAGCCGGAGAGCCGGACACAAAGGCGCAGTGCTGTCAACGTTCACATCATCAGTTTGTCTGTTTCCTAAATTATATCGGAAAGCTGTTCTcctgcagggagagggagagggagagagagagggggcccCCATTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58925 lncRNA downstream 182676 45622515 ~ 45622755 (-) True G47259
TU58873 lncRNA downstream 461416 45343301 ~ 45344015 (-) False AMCG00013846
TU58833 lncRNA downstream 537035 45268054 ~ 45268396 (-) True G47185
TU58826 lncRNA downstream 700544 45104223 ~ 45104887 (-) True G47180
TU58812 lncRNA downstream 838503 44966010 ~ 44966928 (-) True G47168
TU59047 lncRNA upstream 19390 45825723 ~ 45826654 (-) True G47358
TU59048 lncRNA upstream 21632 45827965 ~ 45828251 (-) True G47359
TU59058 lncRNA upstream 39516 45845849 ~ 45854800 (-) True G47365
TU59095 lncRNA upstream 114773 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA upstream 114773 45921106 ~ 45922870 (-) False G47391
AMCG00013865 mRNA downstream 20607 45783866 ~ 45784824 (-) True AMCG00013865
AMCG00013866 mRNA downstream 52843 45743779 ~ 45752588 (-) True AMCG00013866
AMCG00013867 mRNA downstream 92852 45712091 ~ 45712579 (-) True AMCG00013867
AMCG00013864 mRNA downstream 102658 45695635 ~ 45702773 (-) True AMCG00013864
AMCG00013860 mRNA downstream 123341 45675256 ~ 45682090 (-) True AMCG00013860
AMCG00013874 mRNA upstream 672 45807005 ~ 45816694 (-) True AMCG00013874
AMCG00013877 mRNA upstream 16784 45823117 ~ 45831441 (-) True AMCG00013877
AMCG00013876 mRNA upstream 51133 45857466 ~ 45859867 (-) True AMCG00013876
AMCG00013882 mRNA upstream 113303 45919636 ~ 45928309 (-) True AMCG00013882
AMCG00013883 mRNA upstream 155857 45962190 ~ 45971610 (-) False AMCG00013883
TU58927 other downstream 181536 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3104363 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5196903 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 5218039 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 5376806 40386061 ~ 40428625 (-) True AMCG00013730
TU59115 other upstream 117589 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 157558 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 269096 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 354206 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 1065536 46871869 ~ 46875370 (-) True G47666

Expression Profile