RNA id: AMCG00013887


Basic Information

Item Value
RNA id AMCG00013887
length 4886
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00013887
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45979106 ~ 45991807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGCCGGTGCTGTGGCCCCAGCCCCGCTCTGCGGCCGCGTCTCCCGGCCTGCCCTGTGCGCGGCGGAAGTAGTCGGCGCTTTCCGGTTGTCAGAGCCGGCAGCGCGGTGTCGGGGGTTGTCTATCCGGTCTCGTCTCTCCTAGTCCGGCCGGAGCTGCACTCACTCCACCAGCGGGAACCCTCTTCTTTCCCGGGACCGTCCGCTCTGCACCCCTGCCCCCTGCGAGCCGCCACAGCGACGTCCTTTTCGGGCGGAAGGGATTCGTCTGCCTCGTCCCCCGTGTCGGCGCTGTCAGCACGGAAGACCCCAGCGAGGGAGGCCGGAGCTGTGGGTCGTTTCTGGGACTGAGCAGGAGCTGAGATCAGCCGCGCTGTGGATCCCCAGCGGCTGTCCGGGCGGGAGGCTAGGCTAGGCTAGGCTGTGTGTGGGCACTGTGCGAGTAGACGGGCGCTCCTGATGAGCGGGCACCGGGCAGGGAGGATCCGCACCAGGGATGCCGACCGGCCGCTGGACTTGGCATGCCGGCCGACCCCCGGGCTGAGCGGGGGCGGCGTGGGGGGCGGCACCGGGTGTATCCTGAGCAAGCTGATCCAGCTGCCCGCACCACCCCTATCCCGGCACCAGCTGAAGCGCCTGGAGGAGCACCGGTACAGCAGCGCAGGCCGCTCCCTGCTGGAGCCCATCATGCAGAGGTACTGGGAGTGGCTGGTGGCCCGCGTGCCCGCCTGGATCGCTCCCAATCTCATCACCGTTGTCGGCCTGGTCACCAACATCCTTACCACCTTGGTGCTGGTGTACTACTGCCCCACTGCCACTGAGCAGgcaCCTTTGTGGGCATACCTGGCGTGTGCCGTAGGTCTGTTTGTCTACCAGTCTCTGGACGCGATAGATGGAAAGCAGGCGAGACGAACCAACAGCAGCTCTCCCCTGGGGGAGCTGTTCGACCACGGCTGCGACTCCCTCTCCACAGtgttcGTGGTCCTGGGGACGTGCATCGCAGTGCAGCTGGGCACCAACCCAGACTGGATGTTCTTCTGCTGTTTCGCCGGGATGTTCATGTTCTACTGCGCCCACTGGCAGACCTACGTTTCAGGCACCCTGCGCTTCGGCATAATTGATGTGACTGAAGTTCAAATCTTCATAATAATCATGTATTTGCTGGCAGCGATTGGAGGATCCGCTTTTTGGCAATCTCCgATCCCAGTGATAAAAATCGAAATGAAAATCATTCCTGCTATCTGTACTGTAGTGGGGGCTATTTTCTCCTGTACAAACTACTTCCGAGTCATCTTCACAGGAGGCGTGGGGAAAAACGGATCCACAATAGCGGGAACCAGTGTCCTGTCACCTTTCTTGCACATAGGATCAGTTATAACACTGGCAATAATGATCTATAAGAAGTCTGCAGTCCAGCTCTTTGAAAAGCATCCCTGCCTGTATATCCTGGCCTTTGGCTTCGTATCGGCCAAAATTACCAACAAGCTAGTGgTGGCACATATGacaaaaagtgaaatgtatCTTCATGACCTGGCCTTCTTGGGCCCTGGGCTGCTATTCCTGGACCAGTACTTCAACAGCTTCATTGATGAGTATCTGGTCCTTTGGATTGCTCTGGTCTTCTCTTTCTTTGATCTCGTCCGTTACTGCGTCAGTGTTTGCAACCAGATTGCGTCTCATCTTCATATTTGTGTCTTCAAAATCAAGCCGCCCCCCACAGTCTCCAATCAGCAAGGGCACAACCACCACTAATGACTTTTCTTTGGGTGTCGTCTTCgatcgttttttttgtttgcttttttctggGTCAACGGAGATGTGATCTCTTCACCAAGTGAATGTAAATCAGTAACGAGGACCCCGGCGAAATCTGCGGGAGGGACGGAGGGATTCAGATGaagataatttatttcagtcacTGTTGTGTGCAATTCTGTTGTGTTGCCAGCCTCGTCTCGTGACAGACTGACGCCGTGCTTCTGGCATAAGGCACAAACGAGGAAAGTTTTTTGTCGTCGTTAGTTGTGTCTGTCGTTGATCAATCTGAATTCACTCGCGACAGTTTATCTAGGAGTAGGGTTAACTTAGTAAGGATAAAAATGAATGTCAGCTGATAGATCCTGATCAATTCATCatgcagtttaatttgttttaaatgacttttaGACCTTTCTCCCTTGGTGTGTTGGACGCTGGCCAACAACCAAGCGCAATGGAACATAGTAATCGTTGTTACATTTCAGAGACCGTCAACGCTCGTCCTTCGTGTTCCTTGTCCGGCTGTTGAGGTGCCGGATCATTTCCTCGCCCTGTTACATCCCAGGTCTTTTAGTTGGCTGTTTTTACCTCCAGTTGGAAAGGTGAGACTTTCCAGCCAGAAAGAAAGTCTACTTTTAATCAGAGTGCTGCTTTATTGGATGGTTATGAATAGTTTAGAGCaggagaataaaaataaataacttttttgttttttgccactGCTGCCAAAATGATTTTGAGCTTCATTAAGAGGGGGCactcatttattaatattttgttataaatgCAACTTAATGTCATAAGATGCTTTAGTCTCGCCTCTTGTCTATAATGCTTGACCtgtaacttaaaaaacaaaaataaaacttgccATCTGTGTCGCCCATagagtgcattgtgggtaaaggaaaatgtattctgtcaAAAGGCAAATTTGAGATAAGGCAAgtcatcttgtttttgttttcctttgtttaccTACCTACAGGATTAACACCATAACCTTTTATGACAATGTAATTACACAACACGGGTAGCTATGTGTCATTTTTCTCCAGCGCTTTTTCATGCTGGGACTAAAACTGGATCTTCTGTTTTCaggataattattatttttaattgtcgAACTCCAGTTGACCTTTAAGACTGCGTTAGTGACTCTCCGGTAGATGTGAATGCTAACCTTTTCCAGTGCAGAGACCTCACAGACAGCAATATGAACCGAGCCAGCTGAGCCCACGTGTCACTACAGACATTTTAGTTATCGTAGCCATAACAAGTAGTCCAGGGATTCACTTACTGAATACTGACAGGCTTTGTCATTTTTGCCTTATACAATCAAGACTATATTGTGTATTATTCATTCTAGGCTGAAGTGATGAGCAAAAGCTGTTGTAGCTAATATCTGTGTGGTTAAAACTCAGAATGCTTCACATTTGAATCCTGTGGATTGTCGTTGCTAGCAGagccattgttttctttatagagttgttttgtgtgttttggacTGAGTTTCAGGCAGTCTGACTTAGCCCTGAAATAAGAAATCAGTTTAACCATAAGCAGCCAGAACACGTCCGTATTACTGTAAGTGTTATGTATTCGACGTTTCCTGCCTTGACGGAAACGATGCTAGTAGGACTCTTAACGAATAACTTTACTTTGCTCTAATCTCttaatatttttgctttgaataGAGAAGTGTGAGAGGGCGATTAGGGAGCAGATTGATACtgtaaaatgcagttttgttatGACAAGCCAATCATGTCTTTGCAACTctacttttgtatttaatcttagttttatttcacaaatgGATGCATTCATCCACCTCATGTATGTTTCCTTTTAAGAAAGACGACCTGTCCAGGATGTATTCTGTATTAATGCTTTGCTGCTAAATCTCCTTCTTTGAtgtcttttaattttaagacatttttgttttatgtgtttaagcattaaaatattaatgcaaGTATTTAGTGAAGAATCTCCATTTCAAAGCTCTTAAACACACCTGTCTTGTTTAGCTTGCAGCATGTAGAGaccacagttgttttttgttatgaaagaaaaaagtggtTGCCTTAAATTccttttgtcttgttttctttttcatggatgttttgtatttgacatTACAGTGTTAACTCAGACAGTACAAGCTGTCTTGACTATTGCTGAACTGGAAAAGGCTAGTGTCAGGAATTAGTATTAGCCAGACTACAGACTATCAATCTCAGGTGTAAAATTACATGCTATTAGGTAAAAACCAAACCATGGTCAGTAGACAATCGTTTAGTTTGTCTCCCccgaataaaaataaatgcatttaacataATAGCTGCTGCTTACTCCATGGATTCTTGTCTGCTAATGATTGTGCGTCTGACATAATATGCATAGTTTACGTGTAGAAATGCTGGCTACCCTATGTGTTTCACCTGCTTTTTACTGTCAGTCCAATGCCTTGACTCAAATCAAGAACATTGTAGTTTGATTTCAGAGTATTAAACAGTATATGTCCATAAAACACGGcttcataatttatttgttcCCAAACCACAAATAAATCTGAATTCTTCAGCTTTAATGACTTCAGTCGAGTCACTATGACATCTCTTGCTGTGCGAAGTATCTCCCTTTCTGAAAAGGAGTCGTAAATGTTACGTTTTGTTTCGGTAAATGACATGCATGTGTTAATAAGGTACAGATCCAAACTGCTTtcgtttttaattaaactgagtATTTCAAAGgcaagtttaattaaaagggTTATTACAAGCTCAAAGCAAAAGGTACGCATACACTCTGTCTCTGCCAGTGTACCGTGCGTTGGGTTGGCTCTTCCCAAAATCGAAAGCTATTATAGATCTTACAATAATGTTCATTTTTGTAATGGGTGGACAGCCCTAAGCCACAAACTGCCTCTAGCTCTACAAATGTAACCAAAGCTGTTGTAATTCTTGCTTGGTTTCAGTCTCATTTTAGATAACTTAAAAGCCTAAccatatttgattttatttttcttgccttCATAGTGTTAAATGACTCATTTTGATGTTATGTTTGCTTGATTGTATCTTTCctgtaaaaaaaatcttaataataatttttaaataaaac

Function

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K13644 CEPT1; choline/ethanolamine phosphotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59095 lncRNA downstream 56192 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 56236 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 124306 45845849 ~ 45854800 (-) True G47365
TU59048 lncRNA downstream 150855 45827965 ~ 45828251 (-) True G47359
TU59047 lncRNA downstream 152452 45825723 ~ 45826654 (-) True G47358
TU59313 lncRNA upstream 239518 46231325 ~ 46238514 (-) True G47538
TU59342 lncRNA upstream 307354 46299161 ~ 46302700 (-) True AMCG00013903
TU59468 lncRNA upstream 811804 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 1065732 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 1079536 47071343 ~ 47075028 (-) True G47717
AMCG00013883 mRNA downstream 7496 45962190 ~ 45971610 (-) False AMCG00013883
AMCG00013882 mRNA downstream 50797 45919636 ~ 45928309 (-) True AMCG00013882
AMCG00013876 mRNA downstream 119239 45857466 ~ 45859867 (-) True AMCG00013876
AMCG00013877 mRNA downstream 147665 45823117 ~ 45831441 (-) True AMCG00013877
AMCG00013874 mRNA downstream 162412 45807005 ~ 45816694 (-) True AMCG00013874
AMCG00013886 mRNA upstream 17297 46009104 ~ 46023024 (-) True AMCG00013886
AMCG00013889 mRNA upstream 36608 46028415 ~ 46038881 (-) True AMCG00013889
AMCG00013888 mRNA upstream 58786 46050593 ~ 46074428 (-) True AMCG00013888
AMCG00013890 mRNA upstream 83957 46075764 ~ 46083314 (-) False AMCG00013890
AMCG00013891 mRNA upstream 95276 46087083 ~ 46087778 (-) True AMCG00013891
TU59142 other downstream 4795 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 54758 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 355211 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3278038 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5370578 40603601 ~ 40608528 (-) True G46423
TU59204 other upstream 83622 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 168732 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 880062 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 1206536 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1873043 47864850 ~ 47868863 (-) True AMCG00013946

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040889 False 1882 mRNA 0.53 10 NC_007133.7 869600 ~ 881725 (-)
grasscarp (Ctenopharyngodon idella) CI01000186_00225560_00231307.mRNA True 1487 mRNA 0.51 9 CI01000186 225560 ~ 231570 (+)