RNA id: AMCG00013889


Basic Information

Item Value
RNA id AMCG00013889
length 1107
RNA type mRNA
GC content 0.58
exon number 13
gene id AMCG00013889
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46028415 ~ 46038881 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGTTTCGTTCTGTGTACAACACACTTTTACTTCACTTTGTACTCGGTTACATCCAGTATGCAGTTCCCTGTGCAAGAATTAACCGTTTGTAGGCCCGGCGGAGGCTGCTTCCCATCGGCATCCCGTGGATATGGTGACCCCTGAGATCCTGAGCGGCGCCGGGGGAGGGCGCAGGGACCCCCGCTCGGACCGGGGGGTGGGCGCCGCTGCCCCGGTGTCGCCCGTGGACATAGACACGGCGGTCGTGCTGCTGGGAGCGGGCGTGACAGCCATCACTCACCCGCTGCTGTACGTCAAGCTCCTGATCCAGGTGGGACATGAGCCTCAGCCCCCCATCATCGGGACCAATCTGTTTGGAAGGAAAGTGCTGTATCTCCCCGGATTCTTCTCCTATGCCAGGCACATCGTCCGAGTGGATGGGAAGAGGGGACTTTTCCGAGGCCTGACTCCCAGGATCGTGTCCAGTGCCATTTCCACTGTGGTCCGCAGTAAACTGAAGCAGgcAATCCCCCTTGAAGACACTGAGCACGTGTCCAACAAGGATGACATTAGGACGTCCCTCAAGAAAGTGGTCAGAGAGACCTCCCATGAGATGGTGGTTCAATGTCTCTCCCGGATCGCCACCCATCCGTTCCACGTCATCTCCATTCGTTGCATGGCGCAGTTTGTCGGAAGAGAGGTGAAGTACAGTGGCTTGATCGGCTCCATCACGAAGATCTTCCAGGAGGAGGGCGTGTCGGGATTCTTCGTGGGGCTGGTGCCTCACGTTCTGGGAGAGGTCATTTTCCTGTGGTGCTGCAACCTGCTGGCTCACTTCATCAACACCTACGCCGTGGACGACAACTTCACCCAGGCCCCAGCAGTCAGAAGTTACACGAAGTTTGTGATGGGGATCGCCGTCAGCGTGCTCACCTACCCCTTCTTGCTGGTGGCCGACCTGATGGCTGTCAATAACTGTGGGCTGGCTGCTGGGGTCCCCCCGAACGCCCTCATTTTCAGATCCTGGGTTCACTGCTGGAGACACCTCAGTGTGGAGCTGTTCCGGGGATCCAGCTTCTTCTTCCGCAGAGTGCCTCTGGACACGGCTGCCTTGACCATGAAGTGA

Function

GO: NA

KEGG:

id description
K17885 MTCH; mitochondrial carrier

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59095 lncRNA downstream 105501 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 105545 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 173615 45845849 ~ 45854800 (-) True G47365
TU59048 lncRNA downstream 200164 45827965 ~ 45828251 (-) True G47359
TU59047 lncRNA downstream 201761 45825723 ~ 45826654 (-) True G47358
TU59313 lncRNA upstream 192444 46231325 ~ 46238514 (-) True G47538
TU59342 lncRNA upstream 260280 46299161 ~ 46302700 (-) True AMCG00013903
TU59468 lncRNA upstream 764730 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 1018658 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 1032462 47071343 ~ 47075028 (-) True G47717
AMCG00013886 mRNA downstream 5391 46009104 ~ 46023024 (-) True AMCG00013886
AMCG00013887 mRNA downstream 36608 45979106 ~ 45991807 (-) True AMCG00013887
AMCG00013883 mRNA downstream 56805 45962190 ~ 45971610 (-) False AMCG00013883
AMCG00013882 mRNA downstream 100106 45919636 ~ 45928309 (-) True AMCG00013882
AMCG00013876 mRNA downstream 168548 45857466 ~ 45859867 (-) True AMCG00013876
AMCG00013888 mRNA upstream 11712 46050593 ~ 46074428 (-) True AMCG00013888
AMCG00013890 mRNA upstream 36883 46075764 ~ 46083314 (-) False AMCG00013890
AMCG00013891 mRNA upstream 48202 46087083 ~ 46087778 (-) True AMCG00013891
AMCG00013898 mRNA upstream 55659 46094540 ~ 46102616 (-) True AMCG00013898
AMCG00013903 mRNA upstream 263645 46302526 ~ 46311118 (-) False AMCG00013903
TU59142 other downstream 54104 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 104067 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 404520 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3327347 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5419887 40603601 ~ 40608528 (-) True G46423
TU59204 other upstream 36548 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 121658 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 832988 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 1159462 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1825969 47864850 ~ 47868863 (-) True AMCG00013946

Expression Profile