RNA id: TU59204


Basic Information

Item Value
RNA id TU59204
length 1015
RNA type TUCP
GC content 0.57
exon number 6
gene id AMCG00013890
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46075429 ~ 46083542 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagaggaataggGAGAGCGGGCGGAGGGGGGGAGCGTGTGAGCTTGTGCTGGTCCCGGGAAAGGAGGCAACAAAAAGATAGAAGACAGAACAACAAGAAGAGTACCGGGGGGTGTTCATCCAGAGGAATACAGCAACGGGATTATCATTTTTTTGGGATCGTTGGGTTTGTTTAACTTCCCTCCCCGTCTATTTAGTCTCGGGTCTGCTTTCGCGGGACAGCCAGCATGGAGGCCAACGCAGTGGGGGCGGCTTCCATCATCATGGACAGCGAGACCCTGCGGAGGAAGCAGAAGGAGAAGCTGAAGAAACTGCAGGCCACTGGTGGGAACCCGCGGCCGGCACGCTCGCTGTGCTGCCTGACGCTGACCAACCCCTTTCGCAAAGCCTGCATCAGCATCGTGGAGTGGAAGCCGTTCGAGATCATTATCCTGTTGACCATCTTCGCCAACTGCGTGGCGCTTGCCGTGTTCCTGCCCATGCCTGAAGACGACACCAACTCGACCAACTCCAGCCTGGAGAAAGTGGAATACATCTTCCTGATTGTCTTCACCATCGAGGCGTCTCTCAAGATAGTGGCGTATGGGTTTTTATTCCATCCGGATGCGTATTTGCGGAACTGCTGGAATATACTGGACTTTGTGATCGTATTTGTTGGGCTCTTCACTGTGGCCCTGGAGACCATCAACCGCATTGAGGGGATCGAGACGCCGGTCGGGGGGAAGGGGGCCGGCTTCGACGTGAAGGCCCTCCGAGCATTCCGAGTCCTGAGGCCGCTACGCCTCGTCTCCGGCGTCCCCAGCCTGCAGGTGGTGCTCAACTCCATCATTAAGGCCATGGTGCCACTGCTGCACATCGCCCTGCTGGTCCTCTTCATGATAATCATCTACGCCATCATCGGCTTGGAGCTCTTCAAGTGCAAGATGCACAAGACCTGCTACTACAGTGGCACACGCATCGTGGCAAGTGTGGAGAACGAGAAACCAGCGCCCTGTGCGTTGGGCGGCCATGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59095 lncRNA downstream 152515 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 152559 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 220629 45845849 ~ 45854800 (-) True G47365
TU59048 lncRNA downstream 247178 45827965 ~ 45828251 (-) True G47359
TU59047 lncRNA downstream 248775 45825723 ~ 45826654 (-) True G47358
TU59313 lncRNA upstream 147783 46231325 ~ 46238514 (-) True G47538
TU59342 lncRNA upstream 215619 46299161 ~ 46302700 (-) True AMCG00013903
TU59468 lncRNA upstream 720069 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 973997 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 987801 47071343 ~ 47075028 (-) True G47717
AMCG00013888 mRNA downstream 1001 46050593 ~ 46074428 (-) True AMCG00013888
AMCG00013889 mRNA downstream 36548 46028415 ~ 46038881 (-) True AMCG00013889
AMCG00013886 mRNA downstream 52405 46009104 ~ 46023024 (-) True AMCG00013886
AMCG00013887 mRNA downstream 83622 45979106 ~ 45991807 (-) True AMCG00013887
AMCG00013883 mRNA downstream 103819 45962190 ~ 45971610 (-) False AMCG00013883
AMCG00013891 mRNA upstream 3541 46087083 ~ 46087778 (-) True AMCG00013891
AMCG00013898 mRNA upstream 10998 46094540 ~ 46102616 (-) True AMCG00013898
AMCG00013903 mRNA upstream 218984 46302526 ~ 46311118 (-) False AMCG00013903
AMCG00013905 mRNA upstream 301140 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013908 mRNA upstream 304612 46388154 ~ 46389618 (-) True AMCG00013908
TU59142 other downstream 101118 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 151081 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 451534 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3374361 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5466901 40603601 ~ 40608528 (-) True G46423
TU59251 other upstream 76997 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 788327 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 1114801 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1781308 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1883883 47967425 ~ 47974915 (-) True G47896

Expression Profile