RNA id: TU59342


Basic Information

Item Value
RNA id TU59342
length 2499
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00013903
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46299161 ~ 46311118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCGTATGACgacttcctgtttttcttttgtcgTAGGAGGAAATGACCAGCGCCTTGGCCACCATGAGAGTGGACTACGAACAGATCAAGATCAAGACGATTCAAGATGCCACCAACCCCCTGCtgatgaagaggaggaagaagaacaCGGCCGAGGAGGCTCCGGCCCTCTGAGCAGCCAGTAGCCACAGCCACGCACTCGCACCCCAAGCAATAATCATTACaagaaaaagagaggaaaaaaaaacatgcaagtcAGACTCAGTTATAAACGCATggattttcataaatgtataaacagttaggattttattttccttaattttttttaagcgatttttatttttattactcaCTCGATCTCTTCGATGAGTCAAGCACTCGTGCGATGGGATGGCTAGAGGGCCTGGAGGCGACAGATACCGGCTTTGCAGGGCCACGACCGGAGGGGACTAAGAGGAGATAGTTTTGATAAATGATGCAGATTTCATTGTTAATATttctattttcatattttgttcttgCTTTACTGCCCATCGGGGGGCAGAAGGGAGTTCAGCCCCAACCCCAGCTCCCACTtaagTCGGACGATGCAAGAAGAGGATGTCGCTCTGCTGTGGATTGACAGGGTCTCAATTGTCTGGTCCTTCAGGCACGAGACGATGGTAGTCCTGTGCATGTCTGTGGGGCGCTCCACTCCCACGGTCAGCTGGGGGTGGGATTCCACGCGGCGCGGCTGTGTCGTAGCCAAGGTCTGCACTGGGCTTGGAGGCCCGCTTCCTTCCACGCGCGTCAGTGAAGAAGATGCCTTTGCCTTCGTCATCCTCCAGaacatgagagagagatgagTTTCTGACTCGGGggattttttgttctgtttcgtTTCATGTATCGGTGGCGCATGCCAAATTGTATATTCTTTCCCAACTGGTGTGTTTTACGGTATTTGTTTTGACTCTatagcattttatcatttttaaatttagttttttggtcaTAAGTGGAGTTGAGGGACGGCCAGTAGGCTTTCCAGTCCAACGTTGTCTGTCATTGTACAAACGAGCATTAAAACGCTCCGGCCACACGGGACGTGTGCCCTGTGTAACTCCGGGATCTTGAAAACTGTGCGGCGCACTTGCTTGTCTCTTGGCTGTGTCTCTGGCCTTGAATAAATGTGCGCTGGGAAAGAATGGAGACGGCGAGGGGGATTTTGGTCACTTTGGTTGCCAAATATTGCATTAAACTTCTCAGTTTTTATAATCCCTCTGTCTGTACCGGAGAGGACAGAGTGGGAGGGGCTTTTTGAAGGTCCTGGTGCagtcatataatatatatatatatatatataccttttaATTTTGAGAGGGTTGAATTGATACAACATtgtgctttaaaattaaatacaaaagaaaacttTAGATATACCACAGAACGTCTCTGACGAGTAGTGTTcacattttgaatgtatattttgtgcTTGGCAAGGATCTACGAGTTATAACGTCCGTGTGGGCTTCAGCATGATCTCGAGACCTACAGCAGCCATAGATGAATGCCAGCTGCCACATCCGGAGCAGGGAAGTCAGCCCAAGCCAGTCTCGCAGTGGAAGGCATCAGGTGTGTGGCATGACCACGCCAGCCAGGGGCAGGCCGACTCCGTGTGGTCATCTCCTCCGTCCCGTTCTCTTTCTCCAGCTGCTCAGTGAGAAGTGTGCacctccatccatccatccatctggTTTCCTGATGGGTTCTGGCCTTCAGAGGTGGCTGAAGCCTGGTTTAACCACCGCTTTTGATGATCTATGTCCTACTAAAACAAACTGACTAAAGTACCAATGACAATTCCTGACACAAGCTTGTGGCGATTGTGTTGCCAGTGGTTGGCTTGGAAGGCCGTAGTGGTGGTCGTTTCATGGATCACCAGCTCCATGAtcttcaatttttattttattttagtatatttCCAAAGTTTTCTACCAGAGACCTTTCATGGCACCTACATTGAAACGGCACCCGGGCAAAGCATTAAAGGGACTTCCTTCAGCAGTATTGCTACTTTAAACGAACCGTCTGAGCCATAGCTCCAATGGGACACTTTGAGTCAAAATAACTACGGCCTGGTTAACCAGTCACCCCCCAGGAATGGGATTTCTCCCGTTTGTCACTGGATGACACACCAGAGTAATGGggttcagtctttttttttttttttttttttttgttcccacATTTTTATGATAGTTTTCAGTTTGCAAGTGCATTCTTTAGTGGAATTAATTTCAAGAAATGTAAAAGAATTATGACCACTAATTAGTGtaatttctctttgttttctgttgtctgCCTTCACAGCagtgttggtgttttttctttctccaataTGAAAGAAGCACAGTtgcatcttttgttttgttttttgatttaatGTCAAACTGCTGTACTAATGTCCAGGTCTGCTTTTACTTCGGATTAAAACACTTAAACGAAACAAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59313 lncRNA downstream 60647 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 376247 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 376291 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 444361 45845849 ~ 45854800 (-) True G47365
TU59048 lncRNA downstream 470910 45827965 ~ 45828251 (-) True G47359
TU59468 lncRNA upstream 500911 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 754839 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 768643 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 923101 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 1192711 47495411 ~ 47495684 (-) True G47807
AMCG00013898 mRNA downstream 196545 46094540 ~ 46102616 (-) True AMCG00013898
AMCG00013891 mRNA downstream 211383 46087083 ~ 46087778 (-) True AMCG00013891
AMCG00013890 mRNA downstream 215847 46075764 ~ 46083314 (-) False AMCG00013890
AMCG00013888 mRNA downstream 224733 46050593 ~ 46074428 (-) True AMCG00013888
AMCG00013889 mRNA downstream 260280 46028415 ~ 46038881 (-) True AMCG00013889
AMCG00013905 mRNA upstream 81982 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013908 mRNA upstream 85454 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013907 mRNA upstream 102124 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013906 mRNA upstream 149364 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013910 mRNA upstream 167671 46470371 ~ 46507717 (-) True AMCG00013910
TU59251 other downstream 135674 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 215619 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 324850 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 374813 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 675266 45623238 ~ 45623895 (-) True G47261
TU59474 other upstream 569169 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 895643 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1562150 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1664725 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 2515283 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile