RNA id: AMCG00013925


Basic Information

Item Value
RNA id AMCG00013925
length 2367
RNA type mRNA
GC content 0.62
exon number 13
gene id AMCG00013925
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47151091 ~ 47162001 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGACCCTGGCCCCCTTCCCCTGTGTCTCCATGGTACCCGGGATGTGATGATGGTTGGCGTTGGAGTGAAgtgtgaggaagaggaggagagccGGGCCCTGAGCCGGGAGCCCAAGTGCGCCTCGCCCTGCGATTGGACCGCTCCTCCACCCGCCGCGCGCATGGACCACAGCCCAGCCGGAACGCCCCGCAACACGCACACCCCCTCGGAGGGCTCGCCTAGCAGGGAGAGGACGCACCGCCGCAGCCCCCTTGTCCAGGACGGCGGACACAGGGGCCACGAGAGGCTGGAGCTGCACCGCAACATCAGTGAGGTGATGCCCACCATCGAGAAGCTGTTGAGCGCAGACTGGAGAGAGAAGCTGCTGGGGAAAGGCTGCGTGTCGAGCAGTGCCGACCTGAAAGGAACCCCCGAGAGCCTGGCGGAGAAGGAGCTGCAGCTGTTAGTGATGATAAACCAGCTGTCCAGCCTGAGGGAGCAGCTCCTGAGCGCCCACTCCGAGCAGAGGAATATGGCCGCCCTGCTCTTcgagaagcagcagcagcagatggAGCTGGccaggcagcagcaggagcagATTGCcaagcagcaacagcagctgattcaacagcaacacaaaatcAACCTCCTCCAGCAGCAGATTCAGGTGAATATGCCCTACGTGATGATCCCTGCATTCCCTCACAGCACACAGTCGCTTCCTGTGGCCTCCGACCCTCAGATGAGGCTGCCGATTCAGCCCATTCCCTGCAAACCAGTGGACTATCCCATGCAGCTGCTGAGTAGCCCACACTCCACCCCCGTGAAACGGCCCAGTGGACCGGTCCACCTGCAGGAGGCCTCCCAGCCCCTGAACCTCACCTCCAAGCCCAAGGCCCCAGAGAGAGGGAAGACCCCCAGCCCCCAGGCCCCGGAGGGCGCTCCCCCCGGACACCTGCCACCTGGCTATGGCACCCCCATGGACCTGCAGCACAGCCCCCCCCAGCCGGGGCTCAGTCTGGGGTTCCTGGGCGAGGGCGACGTGGTGACGCAGGCCATCCACGACGCGCGGCAGCTGCTGCGGAGCCACGGGGCCGGCGGGAGGAACCAGGAGCGAGAGCGGGACTGGGACAGAGAAGGGAACGCCCACAGGAAGgaGAGTCACCTGCACCAGGAGAAGGGAGAGGAGGGCCAGCTGGCCCCCCAGACGGCCGAGGAGCCGCACAGCAGCGACTCGGAGGGACCTCCTTCTGCCAGCGGTTCTGGCGGGTTCCCTGAGGGCCGGGTGGGGTCTGCCGGGCACATCAAGCGGCCGATGAACGCCTTCATGGTCTGGGCCAAGGATGAGCGCCGGCGCATCCTGCAGGCCTTCCCCGACATGCACAACTCCAGCATCAGCAAGATCCTGGGCTCGCGCTGGAAGGCCATGTCCAACCAGGAGAAGCAGCCGTACTACGAGGAGCAGGCGCGGCTCAGCCGGCAGCACCTGGAGCGCTACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCATCGTGGAGGGCCGGCGTCTGCGCGTGGGCGACCAATCGGAGCAGCAGCTGCACCACTATTCTCCAGCGGAGCCCCGGTACCCCAGCCCCCCGGTCTCCATGACCGCCCTGCCCCTGCACCCCGCCCTGCTGGAGAGATACCTGCCCCGCGCCCTGGAGCCCCACACCTCCCAGCCCAAAGAGGGAGACAGTGGGCCGCCCCCGCCGCCCCCGGCAGAGAGACTTCCCTATAGCGAGGGCGAGGACAGCGACCCGGGGGACCGCAGCGAGGGAGAGCTGGTAGTACTCACCGACTGAGAgtaggtcagaggtcagaggtcagaggtcaaggtGGCGGAAGGAGGACCCCCTGGGGTGGGCATCGCCTCATGCCACGTCTCCAAAGGACAAGACTGAGCAtcggttttaattttgtttgtgtttgtttctttgtttctgtttttaaatcctgAACCCCATGCTGTCACACTAGTATTGGGTGAGCtattacatttagaaatatatgtatataataggTCAACAGAAACCTGCACTTAATACAAATTCTTTAGCATCAATTTTGTGTTTCCTGggaggttttttattttaattgtattaatttttccCCCCCCgagtgtgttttaaaaccaaaccaaaaaacccAACATAGTTCAGTTTATCTAAGTTGGGCTTCCACTGCCCATCGTTGCTCTGTGTGGGGTCTTCCCTCTCACTCTGAAAAGTGTAGCGGGTGTCGGCGAGAGTCCCGGTCGCCGTGTGGTCACCCGTGACCGGTGCTTTCCAGACTCCTTCGTAACAGGAAGTGGTTCAGCCAGACCCAGACAGAAAGCACTTTGTCTAAGCAGC

Function

GO: NA

KEGG:

id description
K09269 SOX5_6_13; transcription factor SOX5/6/13 (SOX group D)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59536 lncRNA downstream 30490 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA downstream 76063 47071343 ~ 47075028 (-) True G47717
TU59468 lncRNA downstream 312327 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 848391 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 912577 46231325 ~ 46238514 (-) True G47538
TU59609 lncRNA upstream 63800 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 333410 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 378562 47540563 ~ 47545591 (-) True G47809
TU59711 lncRNA upstream 527844 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 805424 47967425 ~ 47974915 (-) False G47896
AMCG00013926 mRNA downstream 38149 47101579 ~ 47112942 (-) True AMCG00013926
AMCG00013922 mRNA downstream 124710 47024851 ~ 47026381 (-) True AMCG00013922
AMCG00013921 mRNA downstream 133364 47015056 ~ 47017727 (-) True AMCG00013921
AMCG00013920 mRNA downstream 150877 46995142 ~ 47000214 (-) True AMCG00013920
AMCG00013915 mRNA downstream 165421 46976691 ~ 46985670 (-) True AMCG00013915
AMCG00013932 mRNA upstream 26594 47188595 ~ 47200867 (-) True AMCG00013932
AMCG00013929 mRNA upstream 39254 47201255 ~ 47212425 (-) True AMCG00013929
AMCG00013928 mRNA upstream 51598 47213599 ~ 47217346 (-) True AMCG00013928
AMCG00013930 mRNA upstream 68558 47230559 ~ 47240804 (-) True AMCG00013930
AMCG00013931 mRNA upstream 82381 47244382 ~ 47274829 (-) True AMCG00013931
TU59474 other downstream 275721 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 987604 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1067549 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1176780 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 1226743 45923922 ~ 45924348 (-) False AMCG00013882
TU59572 other upstream 36342 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 702849 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 805424 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1655982 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1655982 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile