RNA id: AMCG00013928


Basic Information

Item Value
RNA id AMCG00013928
length 777
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00013928
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47213599 ~ 47217346 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCACCATCATGGTCTCCACGCCGGCCAACCGACAGACATTCATCAAGTCCACCATCAGCTTCCTGCGGAAATACGGGTTTGACGGGCTGGACCTGGACTGGGAGTTCCCTGGTGGTCGAGGGAGCCCCCTGGGGGACAAGCAGAAATTCACCCTGTTGGTGAAGACCCTAGCACTTGACCTTACCTTTCCACTTCCTCTCAGCCGGAAGCCTAGCTCTGTTACTGCATCAAATTTGAGCCCACATGGTCTTCTCTTTCAGATCTGCAATTTTAGACAAGGCGCCACCATTAACTGGATTCAGGACCAGAAGGTGCCCTATGCCACCAAGGGAAACGAGTGGGTGGGCTTTGACAACAAGCAGAGCTACGAGACCAAGgtCCAGTGGCTGAAGGACAACAAGTTCGGCGGGGCCTTCGTGTGGGCTCTGGATCTGGACGACTTTGCGGGACAGTTCTGTGGAGAAGGGCCCTATCCCCTGATCAGGCACCTGCGCAGCCTGCTCAACCTCCAGCCAACACTCCCACCTGGAGCCACAACCACCACGCAGGTGCCCGGAACCACAAACACCACAAAGACCAGTACCAGtaccacaaccaccaccaccaccaccaccaaaccCAGCTCTGGCTTCTGTGCCGGCAAGCCTGACGGACTGTACCCGAACAAAGATGACCGTAATGCCTTCTACAGTTGCACTCATGGCAGGACCTACCTACAGAGGTGCAGTGCTGGGCTGGTGTTCAACGATCAGTGCAAGTGCTGCGACTGGCCTTAG

Function

GO:

id name namespace
GO:0071704 organic substance metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59536 lncRNA downstream 92998 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA downstream 138571 47071343 ~ 47075028 (-) True G47717
TU59468 lncRNA downstream 374835 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 910899 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 975085 46231325 ~ 46238514 (-) True G47538
TU59609 lncRNA upstream 8455 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 278065 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 323217 47540563 ~ 47545591 (-) True G47809
TU59711 lncRNA upstream 472499 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 750079 47967425 ~ 47974915 (-) False G47896
AMCG00013929 mRNA downstream 1174 47201255 ~ 47212425 (-) True AMCG00013929
AMCG00013932 mRNA downstream 12732 47188595 ~ 47200867 (-) True AMCG00013932
AMCG00013925 mRNA downstream 51598 47151091 ~ 47162001 (-) True AMCG00013925
AMCG00013926 mRNA downstream 100657 47101579 ~ 47112942 (-) True AMCG00013926
AMCG00013922 mRNA downstream 187218 47024851 ~ 47026381 (-) True AMCG00013922
AMCG00013930 mRNA upstream 13213 47230559 ~ 47240804 (-) True AMCG00013930
AMCG00013931 mRNA upstream 27036 47244382 ~ 47274829 (-) True AMCG00013931
AMCG00013933 mRNA upstream 58325 47275671 ~ 47290041 (-) True AMCG00013933
AMCG00013934 mRNA upstream 106365 47323711 ~ 47368062 (-) True AMCG00013934
AMCG00013936 mRNA upstream 193022 47410368 ~ 47416382 (-) True AMCG00013936
TU59572 other downstream 12702 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 338229 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1050112 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1130057 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1239288 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 647504 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 750079 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1600637 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1600637 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1600637 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile