RNA id: AMCG00013929


Basic Information

Item Value
RNA id AMCG00013929
length 7442
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00013929
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47201255 ~ 47212425 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGTGGCGCCATCTTTGTTCCGAAGCCGCAGCAGGAAGACGAGCGGACGGAGAGAAGAGGCGACGCTGCGCGTTTCTCTTTCAGGGGAACGAGCctaatccttttctttttaatagatatatataaacaccGGGTAACTAAAGCGTTATTTAACTCAATTATGTCGTTTTATTGGGAGGACtggggttatttttttttactttattgtggTGTCGAGCTATTATGTAAGCTAGTTGACGAGGGAGCGGAAGGCCTTCCTGCGATTAAGTAGATTATAATAATCGAAACACGTCCACTGTATCCATATTGTCGTGCCATTTACTCTCTCCTGGCTGTGTGCTATTGTATTAACCTGTGTGTTTAGGGACGGGGAAGCGGGTTAAAAACGCTGCACAACAAAAGAGACATCCCGGAGTTTTAATCGCTTTACTGGACCTATTGTGACCCTGTAGTTTAGTGTCTGTATAGAAACCTGATTTTCTCCCATGGCggactgtgtgttattattacagtatCGTAGGAGATTATAAACGCCTCCTGGCAGTGAACCATCTTGTTGATCTGTAAGGTTACCGTATGTCTTtcattgtctgtgtttttattgtccACAATATATCTCTGGTAATGTACAATAGTAGTGTATTTCAGCCACggtatttgtaataataatataggaaAGTTCAGTATTGACGATCAACACGTAGATGCAGTTTTGCACGGCCCTCCATGATTTTCTGAGTCCGATAATCTGATCCAGTTATCACAACCATGCAGCTCCAAATGATTGGTATTAGTCGTATCTATACCGACTATAACATGTCTTATAAAGGAGCCATACGAAAAGCATGGGGCACAGAATCATATATCGGTCCTaaatttattaacaaaaacGTGTTTCTCTTTATAATTTTTACAGTCAACATGTGTTGGCTACTTCCCACATGACAGTGTAGGGGTTTCACATGATCTGTAAATAGCGATCAGTGCCAAACAATGTTGTATGGTTGTGCCAAAACGTCATGGTGAATAAATGAGTCTCTGAACCAGGGCCCTTATCACTGTGCTTACAAATTGTCATCTGACATGCGTCCTACTGTGATGCTCCACATTCAAACCACAATCAAGcatatttaatgtgatttatttcataCCGTCTTATTCTGGTGTGAGGAATGGTCATCTTCAGATGTCCTAACTTCATAGGAATAGTATTGTAGAGAGAGATAATGACCAGGTTGATCCACACATCAAGTATCATTAACATGAATACATGCTCAAGCACTGTCCAGGTGGTTGCAAGGTTTCGTGTTTGGTTTGGTTGTGTAAAATTGtgtttccagatgtttttttcttttacacccTTTAAACTAGAAGTGTGAACAAGGTGTCTCTGAGCTCGTTAGATTAATGAGGTGGCCGAGGAGCAGTGGGTTCACCTGTGCTTTCTGGTGCCCTGAGGGGTGTGTAACACACGGTCAGGGTCCTGCAAATGGGATGGAAAGCATTTTAATCATCCAATCTATGCTTTCTAACACGCAGCCTGTCAATTCTAACCCAAAATGATGTTGTATGGAAAAAaagatggggaggggggagtgttttttgttctgtttttttttaaatttaggtAAAGAAGCAACTTGTCCTCCCTGCCTGAAGATCACTGAAAACAAATTCTCTAGAAGACGGCTGATTtctctactttttttttcttcttccccctcTGCTGTGACAACATGGCACCCCCCCTGTCCTATTTCTCTCTATCACAGccctctgccccccccctcaCAGTGGACTCTAGTAgaagattttttcttctttttttcccccacaccaATTTTTTTTCCGTATTCCTCCCGGCTGTCTTCTGGAATCCCGtcgggggaaaaaaaggaaatttgcCTCCTCCTCCACACCCCCACTCGCCTTATTCCCCACGCCCACATGCACCCCCCATCATCCcgctttaacaaaaaaaaggcaacaaacaaaaatattaagcgagagagaggagaggagaaaaaaaaagacttgccCCATCCGTCTCTAGGGATTTCAGGCAGCTGATGAGAGAGACCCCAGGAGCTGTATGTCAGAGGGGGAAAATAGAACAAGTACCCTTTGCCTTATAACTCATGGGTCGAGTGTTCCTTCAGGACCTGCAGGAGAGGCCGCTGGGAAGTGGGTGAAGAAGGGGACTACCCACTCATCGCGCCAGGGAAGATTCCCGTGGGCCTGTTCTTGGAAGAGACGTGACCCAGGAAGAGGCTGCCTGAACTGGAAGAAAAACTGACCTGTTGAGAAGAAGTCTTATTTCAGTTTCCTCACAATGTCCAACCAAGGAGATGACTGCTACTTCTTCTACTACTCCACCTGTGCTAAGGGCGACGGCTGTCCGTTCCGTCACTGCGAAGCGGCCATGGGCAGCGAGACGGTGTGCAACCTCTGGCAAGAGAACCGCTGCTTCCGCAAAGTCTGCAAGTTCCGGCACATGGAGATTGAGAAGAGGCGCAGTGAGATTGCCTGCTACTGGGAGAGACAGCCTGCTGGCTGCCAGAAGCCAAACTGTGCCTTTCACCACGACAAGCCCCGAATCATCGACGGGGTCTTCCTCCCAGCCAGTAAAGCTCCCGTCCTGAGGAAGGAGGAGGTAGAGGAGGAAGCCCCGCTGGCCgccctctctccccctgcccccACCGCCCTCCCCAGCCCAGCCAACCCGCAGCTCCGCGGGGTCATCAAGGCAGAGAACTCGGAGAGCGTCCCGAGCCCCACGCACCCCCCCGTGGTCATCAATCCAGCCGACGACGAAGACGAGGATGACGATGATCAGTTCTcggaggaaggagaggagagcaggACTGTGGCAGAGTCATCGCAGGCCGCGTCGCCAAGGAAAATGCTCTGCCACGGCAGCAGAGAAGATTCGTTAAACTTCGGCATCAAGACACTTGAAGAGATCCGTCTGAGAAAGACTCTGAAGGCCAATCTGAAGAGATCCGGACAATCACCCAACAGCCGTTCCCCACCAGCCAACGATCTTCCTCATCCAGCCCAACAAAACAACGGGACCAGCCTGGAGAAGGAGAGCGCAAGGACGGTGTTGAGGCCGGCGCTGCTTGGTGTTCAGAAGCCAGCCTTCCCCGTCCAGCCCGAGCTCCCCATCAAGCGCAGCATAGCGGACAGGCTGGGCAAACGGAAGGCGGCCCTTGTGGGAGACGTGACCGTTATGGTCAACAAAGATCTGTCGGTTGAGAGCGACCTGCCCCTGAAGCGCAGCCTGGCAGAGCGGCTGGGCAGTAAGGTGGCGTGTCCTGAGGACGGGGAAGCGCTTTCTAAGCTCTCGGTCCTAAagcctgtgagagagagactgggttTGCCTGGGGATCAAGCAGCCCCTGAAACAGCAGAGAGTGAGGCTCAGGGCAGACCGTCAGCTGGGATCCGCATCAAGACCCTGGAGGAGATCCGGTTGGAGAAGGCGGCCAAGTCCCAGGCGGAGGGAGGGAGTGCCCCCCCTGAGCAAGCCCCCACCGTGGACCCCCCGGCCGAGCAGAGAGCCGCCAGGGCCCCCGCTGGCGCCCGCATCAAGACCTTCTCCGAGATCCTGCATGCCAGGAAGCAGAAGCGCCTCGAGTCGGAGCAGGACGCCAAGGGTGCGACGCCCCCCCACAGCCCGGGAGACAGCAAGGAGGCGGCGAAGCCTGTGGCGGGTGGGCCGGAGGAGAAGGGGCCGGCGGCCGTGCCGGGTGCGGTGAAGGTGAAGACTCTGGAAGAGATCCGCCGGGAGAAAGCCGCCCGCATGCAGCGCGCAATGGGGAATGGCGCAGACGCAGAGAAGACCCCAGATGCCACGGACGGCGCCGGTCCAGGCCCCAGACAGAGGAGGATCCTGCGCCTCCCCAAAGCGCCGGCTGCAGgagCTCAGAATAAAGAGAAGACTGTGGAACAGCCCCAGGAGCCAGGCGCTGCTGCGGAGACCGGCGCGGACGGCGTTAAAGACGTCTCTCCGGCAGAGACGGTGAAGGTGAAGAGCTTCGAGGAGATAATGCGAGAGAAGCGCATGCGCCGGCTGCAGGGGGAGACAGTCGCTCCCCCACCCCCCGTGCAGGCGCCCGTCCCCTCTCCTCCGTCCCCAGCAAAGCAACGGGAGGAGCCCCCCCAGGCCCCCACCTCCCCCCGCAGACCGGCCACCACGATCCGGCAGAGACCGGCTAAAGTACAGCCGGTGCCAACTCCCGTCCAGCAGAGACCCTCCCCGCCAGCCCCGGTGAGACAGCGCATCACTCTCAGGCAGAAGGAAACTGCCCCGGCTGTGTCCCTGGCCCGGGTCGCTGCAGGGGCGCCCACATCTCTCGTGGCCAAGCGGACGCTCGCTGCTCGGGGCGGCTCCGTGGACTTGGCCGCCTCCCctttcaaacacacaaatctCCTCCCTGCTGCTCAGGAGGGCCCGTCTCCCGCCACCCCAGCCCCACAGCCCAGGCCCGGCTCCTCCACTGTGCCGGAGAGCCCCGGAGACACAGCACCGCCGGCACCCAGCCCTGCCCCCGAAGAGAAGGCGGTGAAGGTGGAAGAAGTCGTGGCCAAGGTGCCGACGCCGGAACCCAAAGGTAACGATCTCGTGTCTCCGCCTTCCTCCAGGAAATGGGGCGATCGGTCGAGCCCCGTCTGCAGTCTGGCTGCTGTAATCCGGTCTCTCTCTGTTCCAGTGCGTCCCAAGCTGAACGTGAAGCCCTCGGTGGTGAAGCCTGCAGCCCCCGTGAGGTTGGGCCAGAAACGCAAAGCGTCCGAGGGCCCCCGGTCTGCCATCGCGGCCGTCAAGCCTCTAAACAGCGCCCCCTCTGCCTCGGAGGAGGCGGCGCAGGAGCCGCCCTGCAAGCAGACCCAGACCACCACAAAAACAGAGCCAGAAACCGTGACGTTGCGGGAGGGAACTCGGGCCCCCGGCCCCTTAGAGGAGGCCCCTGCTGCCCCCCAGGCAGAGCCACAGCCACCCCCCACCCTGGAGCAGAACCCTGCCATGCCTGAGCCAACCCAAGTGTCTCCGGCCGCCACAGCGAGCCCCGCCGTGATGAGCCCCCCGGCGCGGCCTTCCTCCCAGGCGAAGGCGCGTCGCTTGAGCTCCACCTCCGGGCGCCCCCCTGCCGGCCCGGCCTCGGGCTCCGCTGTGGACGACTTCGAGGAGCTCATGAAGGAGTTCTCAGACGACCGGCTGGAGGACGACCTGGAGCTGGATCCCGCCAAGGACGAGGAcgagctgctgctggagctcTCGGAGATGATCGGCAACTAGAGCCGCGCTCTGGACTGCACTCGGGCCGCGGGGACTTCCCAATGGACTTGTTTTAAATCCGTACAGAGCAACAGCCACTGCTTCGAGAATCGGACATGGGGTGTGAGAAATACTACTTCCCCacgtttttttaattgctaagAAGTTGAATGTCTCCCCCTCACATTCAGCGCTGCTCCTGCCTAAGATGAACCCCCTCCGCTCtggattcatatatatatgtgtaaagtagggaaaggtttttcttttaactttttttttgccccAAAAAACGTGTATTTCTTGTAACTTAAACTTCTCCCTTCCTTTGCATAGTTTCtgcacatttaacatttaaatgtttctgcacAGTGTTCCCAGGGGGAATTTTTATCacaagtatttgttttcttgtaggTTTTCTTATAGATTTAAATCAGTCGTTTTTTCACAGTTGCAAACGGAAGAATGGTCAAACCCCCTCTCCTCGCGTGTGGAGGGGAGGATCTAACATAGAGAAGCCGGCCCGTACAATCTCCCCTGTGCAGCAAAGTTACATCCCACTGACTCGACTCGAATCAGATCTACTGAAGAGCTGCCATGAAGCGGTCCAGCCGGAGCCCATACTCGGCCTGCGCAGGTGTAGAACATCCTGAATTAGAAGTGGTGTGGAGCAACAGAAGCAGGGGGGCTCGGTCGACCGCACTTGCCTCGGTGTTTGCCAATCCAATTAATAGTCTTTTGACacctttaaataatgaaataaattcaAACTGGATGTAGCCGTGCTGGTTATCTGTATGCAGGCTGAATTCATGGTTCTTGAGTTAAgtatggaaaaagaaaatggcaacaaATCCCCTTTTATTCCTCTTCGGTGTCTATTAACCGCTTCAGTAAAGACAAGACGGACCCTCCCATCCAGACTGGAGGCTGCAGTTAAGGGGTGTAGAAACATTAgaagaataatgaaaatattaatgtCTGCATATTCACTGCAGTCTGTACAAAtcatgtagtttaaaaaaaaaaaaaaaaaaaggaaacactggTTCCATTAAAAATGCTGCTACAGGGACAAAAGTGTTGAAATGCCAGCCTGGTCCCGAGGACAGAGGTGGATATGAGCGAGAGCGCTTGCGTTAGAGCTGAAAGTCATGACAGAGGTGAACTGCATTTTAGTTCAGACACCAGCGATGGTAGTTTGCAGTCGCCACTGTGACTGACCCTGTGGCGTGAGTTCCCTGTACTGCGAATGCAATCCAATCCGTTCACCAACAGGCGCGTGTGAAGCCAGCTCCCCGCCCCGCGCCGCTCCTGGTGCTCCGGACTGAAACGGCTGAGGGGCCGGGAACGAGGACGCAGACTCCCAGGTTCCCCGCCGTGTTTGACCAGAACTAATGAGAAATGCAACACTGAAGGGTGGTGCACTCTGTCGAGGGGAGGGTGGATCAGTCACTACACCATTTCCTCTTGTGTGTCgattttatgatgatgattatgttcacagtatttttcattttcatgcttAAGTACTGATGTGCTGTATGTCTTACCTCCATTGCAGTGCTGAGACCGCTTTGGGGCCCATGCATTGTTTGCTTAAAGAGCTGAGAATTGATTTCTGggaggtggggaaaaaaacacttgcccatagctacaaaaaaaaaacgatcgGCATTTTACCATCCTCCGTTTCAATCCCCATCTGTAGAAGCTTTGGCTAGAtctcttttgttgttgtcagaCTTCTGTCAGTATGTGAATTTCATAGGTTGAAAACCAGCTTCTCAGGGACGTTATCTTGCCGTctatgtgtgggggggtggattgTGTTCATCCTGGTCTGCCCTGACTGTAGATGTGCACGTGCTGGATACGGCACATGccttacctgtgtgtgtgtgtgtgttttgcaagcTGTAGATAAAATCTCCACATGATGAATTAGTCCTGTTCACCTGGGCAAAATACCTGTAAACCTTTCTGATTGGCCTGTATTGCGCTGCTCTCATTGCTGGGATGAAACTGAGTTTTGCTCTGTTAACCAAGGAGTCTGGGGTTGGGTTTCTTTGTTgcttaatgttttcattttaaatgcctgTATACTACCATCAATGCcacttttcatttgtaaataaaacaaaacttttttaaaaaaa

Function

GO: NA

KEGG:

id description
K22415 ZC3H11; zinc finger CCCH domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59536 lncRNA downstream 80654 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA downstream 126227 47071343 ~ 47075028 (-) True G47717
TU59468 lncRNA downstream 362491 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 898555 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 962741 46231325 ~ 46238514 (-) True G47538
TU59609 lncRNA upstream 13376 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 282986 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 328138 47540563 ~ 47545591 (-) True G47809
TU59711 lncRNA upstream 477420 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 755000 47967425 ~ 47974915 (-) False G47896
AMCG00013932 mRNA downstream 388 47188595 ~ 47200867 (-) True AMCG00013932
AMCG00013925 mRNA downstream 39254 47151091 ~ 47162001 (-) True AMCG00013925
AMCG00013926 mRNA downstream 88313 47101579 ~ 47112942 (-) True AMCG00013926
AMCG00013922 mRNA downstream 174874 47024851 ~ 47026381 (-) True AMCG00013922
AMCG00013921 mRNA downstream 183528 47015056 ~ 47017727 (-) True AMCG00013921
AMCG00013928 mRNA upstream 1174 47213599 ~ 47217346 (-) True AMCG00013928
AMCG00013930 mRNA upstream 18134 47230559 ~ 47240804 (-) True AMCG00013930
AMCG00013931 mRNA upstream 31957 47244382 ~ 47274829 (-) True AMCG00013931
AMCG00013933 mRNA upstream 63246 47275671 ~ 47290041 (-) True AMCG00013933
AMCG00013934 mRNA upstream 111286 47323711 ~ 47368062 (-) True AMCG00013934
TU59572 other downstream 358 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 325885 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1037768 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1117713 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1226944 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 652425 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 755000 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1605558 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1605558 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1605558 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02230144_02236022.mRNA True 3342 mRNA 0.45 15 CI01000306 2230144 ~ 2236982 (+)