RNA id: TU59572


Basic Information

Item Value
RNA id TU59572
length 714
RNA type TUCP
GC content 0.48
exon number 5
gene id AMCG00013932
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47188595 ~ 47200897 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCATAGTGCTTTGCGTTTGGACCGGAAACCCGCCATTATAAGCGGAAGTTGGCCGCGGCGTGTGGAGCTCGTTCGCACAGGAAGAAAGAAGCGCGGATTGGCACGCAGAACCAGagagaaaactacagaaaattaaacgtcaaaagaaaagaaacccagCCGTTACAGAGGAACCATGGCGTACCGAGGGCAAGGACAGAAAGTCCAGAAAGTGATGGTGCAGCCCATTAACCTCATCTTCCGCTATCTGCAGAACAGATCCCGGATCCAGGTGTGGTTGTACGAGCAGGTGAACATGCGGATAGAAGGCTGCATCATTggtTTTGATGAATACATGAACTTGGTGCTCGATGATGCCGAGGAGGTCCACATGAAGACGAAAAACAGGAAGCCCCTGGGACGGATCATGTTGAAAGGAGACAACATTACTTTACTGCAGAGTGTAGCTACTTAGTGCTGTCCAGTCTGTCCGTATGGCCCAACTCTCAACACTGCTGCCGTGGTTTTCCAGCGCGAAGAGAACCTGAGCCGGGTTGTTATGTTTTTGTGCGGACAAATTTCTCAATTCAGACCCAGACATACTTGCTGACTTGGCTGCTAAACAGCTTAGTTCTTTCCCCTCCCTGTCCCCTTCCTGTTTTGCAACTTACACTATATagtattttttgtgtatgtgtttccgTATTAAACATCTGGACTGTTTTCTATTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59536 lncRNA downstream 77742 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA downstream 123315 47071343 ~ 47075028 (-) True G47717
TU59468 lncRNA downstream 359579 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 895643 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 959829 46231325 ~ 46238514 (-) True G47538
TU59609 lncRNA upstream 24904 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 294514 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 339666 47540563 ~ 47545591 (-) True G47809
TU59711 lncRNA upstream 488948 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 766528 47967425 ~ 47974915 (-) False G47896
AMCG00013925 mRNA downstream 36342 47151091 ~ 47162001 (-) True AMCG00013925
AMCG00013926 mRNA downstream 85401 47101579 ~ 47112942 (-) True AMCG00013926
AMCG00013922 mRNA downstream 171962 47024851 ~ 47026381 (-) True AMCG00013922
AMCG00013921 mRNA downstream 180616 47015056 ~ 47017727 (-) True AMCG00013921
AMCG00013920 mRNA downstream 198129 46995142 ~ 47000214 (-) True AMCG00013920
AMCG00013929 mRNA upstream 358 47201255 ~ 47212425 (-) True AMCG00013929
AMCG00013928 mRNA upstream 12702 47213599 ~ 47217346 (-) True AMCG00013928
AMCG00013930 mRNA upstream 29662 47230559 ~ 47240804 (-) True AMCG00013930
AMCG00013931 mRNA upstream 43485 47244382 ~ 47274829 (-) True AMCG00013931
AMCG00013933 mRNA upstream 74774 47275671 ~ 47290041 (-) True AMCG00013933
TU59474 other downstream 322973 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1034856 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1114801 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1224032 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 1273995 45923922 ~ 45924348 (-) False AMCG00013882
TU59752 other upstream 663953 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 766528 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1617086 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1617086 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1617086 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU712869 True 588 TUCP 0.42 5 NC_048571.1 57319702 ~ 57323021 (+)
eurasian perch (Perca fluviatilis) TU47019 False 534 TUCP 0.43 5 NC_053115.1 1244037 ~ 1248900 (-)