RNA id: AMCG00013934


Basic Information

Item Value
RNA id AMCG00013934
length 4030
RNA type mRNA
GC content 0.60
exon number 29
gene id AMCG00013934
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47323711 ~ 47368062 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTCACGAGGAGCCGCTATTATTGAGACGTCATAAAGGACACCTGTGCGATTCTGTGATGCCGACGAGGGGGCGGGAGCTCTCTCCGGTGGGCGTGGCCCTGCTGCTGCTCTTGTTGCGGTTGGTGGGAGCGATCGACGTTCCGCTGGACCTGAAGCAGCCCCCGACCATCATTAAGCAGTCTCTGAAGGACTACATCGTGGACCCCAGAGACAACATCATCATCGAGTGTGAAGCCAAAGGGAACCCCGTGCCCGTcTTCTCCTGGCGGCGGAGCGGGAAGTTCTTCAACGTGGGCAAGGACCCCCGCGTGACGATGCGCAAGCGCTCGGGGACGCTGGAGATCGGCTTCCGGAGTGGCGGGCGGCCCGAGGACTACGAAGGGGAGTACCAGTGCTTCGCCACCAACGACTACGGCACGGCGCTGTCCAACAAGATCCTGCTACGGGTCTCCAAGTCCCCGCTGTGGCCCAAGGAGGTCCTGGAGCCGGTGGTGGTGAATGAGGGCTCCCCCCTCATCCTGGCTTGCAACCCGCCGCCCGGCCTGCCTCCCCCCAACACCTTCTGGATGGACAGCAACATGCAGCCGATCATACAGGACAGACGGGTGTCCATGGGGCTCAACGGGGACCTGTACTTCTCCAATGTGCTGGCGAGCGACGCCACGAGGGACTACAGCTGCAACGCCCGCTTCCTGTTCACTCACACCATCCAGCAGAAGAACCCCTTCTCTCTCAAAGTGCTCACCACCCGCGGAGTTGCCGAGACCACGCCCAGCTTCCTGTCCCCCAGTGGGACCCCCACCCCCAGTATCAAGTGGTTTAAGAAGGGCGGCGACCTGCCAGCCCGCAAGGCCAAGTCCGAGAACTTCAACAAGACCCTGCGCATCACCGGTGTGTCTGAGGAGGACTCGGGGGAATACTTCTGTATGGCCAACAACAAGATCGGCAGCATCCGCCACTCAATCTCCGtccaggtcaaagctgcccCCTACTGGCTGGACAGGCCGTCCAATCTGGTGCTGGCTCCAGACGAGAGCGGCCGTCTGGTGTGCCGGGCCAACGGGAGCCCCAAACCCACCATCCAGTGGCTGGTCAATGGAGAGCCCATCCAGGGATCGTTGCCGAACCCAAGCCGCCAGGTCGTTGGCGACACCATCATCTTCCGGTCAGTGCAGATCGGCAGCAGTGCTGTGTATCAATGCAACGCCTCCAACGAGCACGGCTACCTGCTGGCCAACGCCTTCGTCAGCATCCTGGACATGCAGCCTCGTATGCTGGGCCCCAAGAATCAGGTGATCCGGGTGATCGAGAACAACCGCACCTTCCTGGACTGCCCTTACTTCGGCTCGCCCATGCCTGAGCTGCGCTGGTTTAAAAATGGGCAGGGCAGTAACCTGGATGGCGGGCAGTACCGGGTGTACGCCAACGGAACTCTGGAGATCCGCCGCACGCGGCCTGAGGACCAGGGCACCTACACCTGCGTGGCCACCAACATCCTGGGCAACGCTGACAACCAAGTCCGTCTGGAAGTCAAAGAGCCCACCCGGATCGTGCGAGCGCCAGAGCACCTGACAGCAACGCGTGGGACTGTGGCGCGGTTCGACTGCCGAGTCAAATTCGACCTCTCTATGCGGGTCACCATCTCCTGGATGAAAGATGACAAGCCGCTGGCACTGGGCTggagGCTGAAGAAGGACGAGGACTCGCTGGCCATCCACAACGTCAACGAGGCAGACGAGGGCACCTACACGTGTACGGCCAGCACAGACCTGGACAGCGACTCCGCCTCCGCCCGCCTCACCGTTCTGGATGACCCCCTGTTTCCGTCCAACCGCAGTGCACTGTTGGCAGACCGGCCTGACCCTCCGGGGGACTTGGAGCTGTCTGACCCATCCGAGCGCAGTGTCCGTCTCACCTGGATCCCAGGGGATGACAACCACAGCCCCATCACAGAGTACCTAGTGCAGTTCGAGGAGGATCGCTGGGAGCCCGGCCGGTGGCAGAACCTCTCCAAGTACCCTGGGAACCTCAACTCCGTCATTCTGCAGCTCTCGCCCTTCGTCAACTACCAGTTCCGGGTCATCGCCGTCAATGCTGTCGGAGCCAGCCGCCCCAGCCGGCCCTCCCTGCGCTACCAGACCAGCGGGGCACCACCTGACGCCATTCCGGGTAGCATACGAGGAGCAGGAACCAAGAAAACCAACATGGAGATCACCTGGGAGCCCTTGCCGGACACCGACAGGAATGGCCCCAACCTGCGCTACGTGGTGTGGTGGCGGCGCCGGGACTCCCGCGAGGAGTGGAAGAACACCACAACCAAGTGGCTGAAGCACATCATCTATGACACCGACACGTACACACCCTACGAGATCAAGGTGCAGGCTGTGAACGACTTCGGCGCGGGGCCCGAGTCCCATGTCGTCATCGGGTACTCGGGGGAAGACCGTCCTCTGTCTGCCCCTACCAACCTGCGGATCACAAAAATAGAGGACAAACGTGTCCTAGTTCACTGGAACCTGGTGCCTTACAGCACCATACAGGGAGAGCTGAAGGAATACAGGGTGTATTACTGGCGGGAGAGCAGTGTGCTGAAGTCCCTGAACGTCAACCGGGAGAAGAAGACCAAGGGCTTCTACACCACCAGTTCGCGACCCAGTGGCTATCTGCCCAACCTCATCCCCTACAGCAACTACAAGATGTACATGGTGGTGACCAACAACCGCTTTGAAGGTCCGCAGAGCAATGTGGTAGAGTTCACCACCAAAGAGGGAGCACCGGTGGCCCCAAAACACTTGCGTATCCAGCAAAGACATATGGATACCATCTACCTGGACTGGGAGAAGCCTGCCGAGCCCAATGGCATCCTGACGGGATACACGCTGAAGTACCAGACAGTGAACGGCACTCGGTTGGGCCGCATGCAGGTGGAGAACTTCCCCCCCAACATCACCAACTTCTCTCTGCGCCGACCAGACCGCTACACCCGCTACAAATTCTTCCTGAGCGCCAGGACTCAGGTCGGGTCTGGGGAGGTGATCACAGAGGAGTCCCCGCATTTTGCTAACGAAGGTAAGCGCAGGCAGGCCTCGTCGCTGCCGGGAGATGCAGACTCCCGGGCCTGTGGAAGCTGCAGCCTTGAGCGCTGTTCCCCCGCCTCAGTCCACCGAGATATTGGTGCCTACCACCGactccacccctcctcctcctccaactCCTACTCCTACTCCGACTACAGTCACCACAATCGCCACAACtccttctactactactactactactactacaaccacaaccaccaccaccaccacaacaacatcTGCGCCTATTCACCTCCTGGCAGAGAGATCTGGAACGTGACGGTCGATCCTAACAGTAACTATGCTAACGTCAGCTGGAAGCACAACTTCCCTCCCGACAGGAGCCAGTTTGTCATTGAGTTTGTTGACAGTAACGGGACAGTGAAAAGTGTACTGGCCAAACACCAGACCCCGGTCAAGCTGGCGGGGCTGACCGAGGGGGCCAAGTACAGTCTGCGCATTTACTCGCAGGACTTCCACACCATCAGCAGCAAGGTCGTCATCTTTGAGACCAGCGCAGCATACACCAAGGACCAGGTGGACATCGCCACGCAGGGATGGTTCATCGGGCTGATGTGTGCCATCGCTCTACTGGTTCTCATCCTGCTCATCGTGTGCTTTATAAAGAGGAGCCGCGGGGGCAAGTACCCAGTGCGAGACAAGAAAGACCTCCCCCTAGATCCCGTAGACCAGAAGGATCAGGACGGGTCATTCGATTACCGTGATGAGGACAATAAGCCCCTGCAGGGCAGCCAGACGTCCCTGGATGGGATGGTGAAGATGCAGGAGAGCGACGACAGCCTGGTGGACTACGGCGAGGGAGGGGATGGCCAGTTCAACGAGGACGGCTCCTTCATCGGCCAGTACACCGTCAAGAAGGACaaagaggagacagaggggaacGAGAGCTCTGAGGCCACGTCTCCTGTAAACGCCATCTACTCGTTGGCA

Function

GO: NA

KEGG:

id description
K06757 NFASC; neurofascin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59609 lncRNA downstream 96457 47225801 ~ 47227254 (-) True G47766
TU59536 lncRNA downstream 203110 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA downstream 248683 47071343 ~ 47075028 (-) True G47717
TU59468 lncRNA downstream 484947 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 1021011 46299161 ~ 46302700 (-) True AMCG00013903
TU59662 lncRNA upstream 127349 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 172501 47540563 ~ 47545591 (-) True G47809
TU59711 lncRNA upstream 321783 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 599363 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 648499 48016561 ~ 48016838 (-) True G47917
AMCG00013933 mRNA downstream 33670 47275671 ~ 47290041 (-) True AMCG00013933
AMCG00013931 mRNA downstream 48882 47244382 ~ 47274829 (-) True AMCG00013931
AMCG00013930 mRNA downstream 82907 47230559 ~ 47240804 (-) True AMCG00013930
AMCG00013928 mRNA downstream 106365 47213599 ~ 47217346 (-) True AMCG00013928
AMCG00013929 mRNA downstream 111286 47201255 ~ 47212425 (-) True AMCG00013929
AMCG00013936 mRNA upstream 42306 47410368 ~ 47416382 (-) True AMCG00013936
AMCG00013935 mRNA upstream 53246 47421308 ~ 47431479 (-) True AMCG00013935
AMCG00013938 mRNA upstream 184072 47552134 ~ 47564711 (-) True AMCG00013938
AMCG00013937 mRNA upstream 199041 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013940 mRNA upstream 215523 47583585 ~ 47623958 (-) True AMCG00013940
TU59572 other downstream 122814 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 448341 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1160224 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1240169 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1349400 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 496788 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 599363 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1449921 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1449921 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1449921 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006706 True 4110 mRNA 0.50 30 NC_007122.7 23810148 ~ 23879647 (+)
grasscarp (Ctenopharyngodon idella) CI01000058_01528111_01564969.mRNA True 4295 mRNA 0.49 26 CI01000058 1527499 ~ 1564969 (-)