RNA id: AMCG00013936


Basic Information

Item Value
RNA id AMCG00013936
length 867
RNA type mRNA
GC content 0.65
exon number 6
gene id AMCG00013936
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47410368 ~ 47416382 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGCTCCTCaggctgttgctgctgctgcttgtgtGTCTCATCCCAGGCCACCCCTGCCATACGCTGGCCCTGCGGGCGGGGGAGACGGTGTCCGTGCGCTGTCACTGCAGGCCGTGGTGCCGGCAGGGCGTGAAGGCGTGGTGCCGGCAGACCTCGGAGAACGAGTGCGCGGTAGTGGCGGCCACCACCGACGGGCCCAAGATGGGAGGGGGGAGGACCCACGTGGCGGACGACGCCGGCGGCCACTTCATCACCCTCACCCTCAGGGACCTGCAGGAGAGCGATTCGGGGGCGTACTATTGCGGTGTCAGGGTCTACGGCCGATTCTACCTGCTGGGGAGGCTGGAGATCAAAGTCTCGGCAGGGAACGTGACCGCGGACCCGGTGTCAACACCCAGGATGGTGACTCTCAGGAAACCGCCTGTCCTCAAAGCAGCTGTGAGCACCGCCGAACCCTCCCCGGTGCCCAGCGCTGAGGACAGAGCCCTGTTCGTCTTTCTGGCCTGTCTGCTGGCAGTCGTTATGCTGGTGGCTGTTGTGACCTTCGTCAGAGTGGTGATGAATGCTGTGCAAGACCACAACATCGAGAGGAGGAAGCTGCCGCTGGTGATGGCGAGACTCACTCGGCGCAAAGCCAAGGACAACGTGTACGGGGGGCTGCCACAGAGGACCCAGGTCACCCTCTACAGAGGGGGGACGGCAGGGGGGGCGGCAGGGCACCTCCACGATGCCCCCCCTTCTCTACAGGGACAGCAGTCAGCTGTGAAGGCGTTCGAGGGCCCAGGGGAGAGGGCAGCGACACCGGCCAGGGGACACAGAATCGCCATGCGTTTGAGCACAGCAGACAATACACCACAGACGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59609 lncRNA downstream 183114 47225801 ~ 47227254 (-) True G47766
TU59536 lncRNA downstream 289767 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA downstream 335340 47071343 ~ 47075028 (-) True G47717
TU59468 lncRNA downstream 571604 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 1107668 46299161 ~ 46302700 (-) True AMCG00013903
TU59662 lncRNA upstream 79029 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 124181 47540563 ~ 47545591 (-) True G47809
TU59711 lncRNA upstream 273463 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 551043 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 600179 48016561 ~ 48016838 (-) True G47917
AMCG00013934 mRNA downstream 42306 47323711 ~ 47368062 (-) True AMCG00013934
AMCG00013933 mRNA downstream 120327 47275671 ~ 47290041 (-) True AMCG00013933
AMCG00013931 mRNA downstream 135539 47244382 ~ 47274829 (-) True AMCG00013931
AMCG00013930 mRNA downstream 169564 47230559 ~ 47240804 (-) True AMCG00013930
AMCG00013928 mRNA downstream 193022 47213599 ~ 47217346 (-) True AMCG00013928
AMCG00013935 mRNA upstream 4926 47421308 ~ 47431479 (-) True AMCG00013935
AMCG00013938 mRNA upstream 135752 47552134 ~ 47564711 (-) True AMCG00013938
AMCG00013937 mRNA upstream 150721 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013940 mRNA upstream 167203 47583585 ~ 47623958 (-) True AMCG00013940
AMCG00013942 mRNA upstream 292831 47709213 ~ 47715995 (-) True AMCG00013942
TU59572 other downstream 209471 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 534998 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1246881 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1326826 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1436057 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 448468 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 551043 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1401601 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1401601 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1401601 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile