RNA id: AMCG00013940


Basic Information

Item Value
RNA id AMCG00013940
length 3777
RNA type mRNA
GC content 0.60
exon number 21
gene id AMCG00013940
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47583585 ~ 47623958 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAACAACACTGCAGACCACCCCCCTGGGAACTCTGTCGCAGAGGGCAACCATGAAGGGGAGTTTGGCTGCTCGGTGATGGATCTGAGGGAGCTGATGGAGCTGAGGAGCGGCGAGGCCGTCACGAAAATCGCAGACAACTACGGTGATGTGCAGGGCCTGTGTCGGAGGCTGAAAACATCACCTGTGGAAGGTCTCTCGGGGAACCCTGTGGACCTGGAAAAGCGACACCAGTCCTTTGGGAAGAACTTCATTCCCCCGAAGAAAGCAAAGACATTCCTGCAGTTAGTGTGGGAGGCGCTACAGGATGTCACCCTGATCATTTTGGAGGTGGCCGCCATCATCTCGCTGGGACTGTCCTTCTACCACCCTCCAGGGGGAGACAATGAGCTGTGTGGCCAGGCGGCCGCTGGGGTGGAGGACGAAGGGGAGGCCCAGGCTGGCTGGATCGAGGGAGCTGCCATCCTGTTCTCCGTCATCATCGTGGTGCTGGTGACGGCTTTCAACGACTGGAGCAAGGAGAAGCAGTTCCGCGGGCTGCAGAGCCGCATCGAGCAGGAACAGAAGTTCACTGTCATCCGCAAGGGCCAGGTCATCCAGATCCCCGTGGCGGAGATCGTGGTGGGAGACATCGCCCAGATTAAATACGGTGACCTGCTGCCGTCTGACGGGATCCTCATCCAGGGCAACGATCTGAAGATCGACGAGAGCTCACTGACGGGGGAGTCGGATCATGTCAAGAAGTCACTGGACAAGGACCCCATGCTGCTGTCTGGTACCCATGTGATGGAGGGGTCTGGCCGCATGGTGGTCACGGCAGTGGGACTGAACTCTCAAACTGGAATAATCTTCACCCTGCTGGGAGCAGGGGGTGatgaggaggagaagaaggccAAGAAAGGTAAAAAACAAGGAGCCCCTGAAAATCGCAACAAAGCAAAAACTCAGGATGGGGTAGCCCTGGAGATCCAGCCGCTGAAGAGTGAGGAAGGAGTTGAATGTGAAGAGAAGGAGATTAAGAGAGTCAACGTGACCAAGAAAGAGAAGTCCGTCCTGCAGGGCAAGCTCACCAGGCTGGCCGTGCAGATAGGGAAAGCAGGTCTCATCATGTCTGCCGTGACCGTCATCATCCTCATCCTCTACTTTGTCATCGACACCTTTGGGGTGCAGAAGCGGCCCTGGCTGTCAGAGTGCACCCCCATCTACATCCAGTACTTCGTCAAGTTCTTCATCATCGGCGTGACGGTGCTGGTGGTGGCCGTGCCGGAGGGCCTCCCCTTGGCGGTGACCATCTCGCTGGCGTACTCGGTCAAGACCATGGGCAACGCCACGGCCATCTGCTCCGACAAGACAGGCACGTTGACCATGAACCGCATGACGGTGGTGCAGGCCTACATCGGCGACACGCACTTCCGAAAGGTCCCGGAGCCCGACGCCCTGCGGCCCGAGACGCTGGAGCTCGTCGTCAACGGCATCGCGGTCAACTCAGCCTACACCTCCAAGATCCTGCCTCCAGAGAAGGAAGGCGGGCTGCCGCGCCATGTGGGCAACAAGACGGAGTGCTCTCTACTGGGCCTGGTGCTGGACCTGAAGCAGGACTACCAGGCGGTGCGGGACGAGGTGCCCGAGGAGAAGCTCTACAAGGTCTACACATTCAACTCTGTGCGCAAGAGCATGAGCACAGTGTTGAAGAACCCCTCTGGCGTCGGCTACCGCATGTACAGCAAGGGAGCGTCGGAGATAATCCTGCGCAAGTGCAGCTACATCATGGACGGGACGGGAGAGGCGCGGATCTTCAACCCCAAGGACCGCGACGAGATGGTGAAAAAAGTGATCGAGCCCATGGCCTGCGACGGGCTGCGCACCATCTGCCTGGCCATGCGGGAGTTCCCGGGCGAGGTGGAGCCCCCGTGGGACAACGAGAACGAGATCCTGAACAACCTCACCTGCATCGCTGTGGTCGGCATCGAGGATCCTGTGCGGCCGGAGGTGCCGGAGGCCATCACCAAGTGCCAGAGGGCGGGGATCACAGTGCGCATGGTGACCGGGGACAACATCAACACCGCCCGTGCCATCGCCACCAAGTGTGGCATTCTGCTGCCCGGAGAGGACTTCCTGTGCCTGGAGGGCAAAGAGTTCAACCAGCTCATCCGCAACGACAAGGGAGAGgttGAGCAGGATCGTCTGGATAAAGTGTGGCCGAAGCTACGGGTCCTGGCCCGCTCCTCCCCGACGGACAAACACACGCTGGTCAAagGAATCATCGACAGCACGGTGGGCGAGACGCGACAGGTGGTGGCCGTGACCGGAGACGGGACCAACGACGGCCCGGCGCTCAAGAAGGCCGACGTTGGGTTTGCTATGGGAATCGCCGGCACAGACGTGGCGAAGGAAGCGTCTGACATCATCCTGACCGACGACAACTTCACCAGCATCGTGAAGGCTGTGATGTGGGGCCGCAACGTCTATGACAGCATCTCCAAGTTCCTGCAGTTCCAGCTGACCGTCAACGTGGTCGCGGTCATCGTGGCCTTCACCGGTGCCTGCATCACACAGGACTCCCCCCTCAAAGCCGTTCAGATGTTGTGGGTCAACCTCATCATGGACACCCTGGCTTCCTTGGCCCTGGCCACTGAGCCGCCCACCGAGTCCCTGCTCCTCCGCAGACCGTACGGCCGCAACAAGCCCCTGATCTCCCGCACCATGATGAAGAACATCCTGGGCCACGCCGTTTACCAGCTCGTCATCATCTTCACCCTCCTGTTCGCAGGGGAGAAGATCTTTGACATCGACAGCGGCCGGAACACCCCCCTCCACGCCCCGCCCTCGGAGCACTACACCATTGTCTTCAACACCTTCGTCATGATGCAGCTCTTCAATGAGATAAACGCCCGCAAGATCCACGGCGAGAGGAACGTCTTCGAGGGAGTCTACCGCAACCCCATCTTCTGCTCCGTCGTTCTCGGCACCTTCGGCTGCCAGATCATCATCGTTCAGTACGGAGGCAAGCCGTTCTCCTGCTCTGGCTTGACCTTTGACCAGTGGTTGTGGTGCGTGTTCATCGGAGTGGGAGAGCTGCTCTGGGGTCAGCTCATCTCAGCCATCCCGACCCACCACCTGAAGTTCCTGAAGGAGGCCGGCCACGGGACGACAAAGGAGGAGATCCACGAGGAGGAGTTCACGGAGGGGGCCGACGAGATCGATCATGCGGAGATGGAGCTGCGCCGAGGCCAGATCCTGTGGTTCAGAGGCCTCAACCGCATCCAGACACAGATGGACGTTGTTTATACATTCCAGACGGGCTCCACGGCTGTGCCCGGGGCCCTGCGCCGCCAGCCCTCCGTGGTCAGCCAGCACCACGACGTAAAAACAGTTTCTAGCCCCACCCATGTAGCgatttcctcttcctccctctccaccAATTCTACTGCTGTCGCCGCCACCGCTAGCGCTATTAAAGTGGTGAATGCATTCCGTAGCTCCTTATATGAGGGCCTAGAAAAGCCCGAATCGAGAAGCTCCATCCATAACTTCATGTCCCATCCCGAGTTTGTCCCCCTGGCAGAAGAAGAATCCCGTATCCCCAAAATCGACGAAAGCAGCATTGAGTTAGAGGGGCTCTCCGGTCCCCCCAAAGCCAAAGGCGGCCCGGGGGGTCACACCTCCAACCGCAACAACAACGCGCTGGACGTCGTGGCGGCCCCCTCCCACGGCTCGTCCACCGCCTCGACGCCCCCCGACAGCCCCCTACACAGCCTGGAGACCTCGGTCTGA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59664 lncRNA downstream 37994 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 87901 47495411 ~ 47495684 (-) True G47807
TU59609 lncRNA downstream 356331 47225801 ~ 47227254 (-) True G47766
TU59536 lncRNA downstream 462984 47057539 ~ 47120601 (-) True G47718
TU59711 lncRNA upstream 65887 47689845 ~ 47694894 (-) True G47839
TU59780 lncRNA upstream 343467 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 392603 48016561 ~ 48016838 (-) True G47917
TU59896 lncRNA upstream 555309 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 591917 48215875 ~ 48216209 (-) True G47995
AMCG00013937 mRNA downstream 11810 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013938 mRNA downstream 18874 47552134 ~ 47564711 (-) True AMCG00013938
AMCG00013935 mRNA downstream 152106 47421308 ~ 47431479 (-) True AMCG00013935
AMCG00013936 mRNA downstream 167203 47410368 ~ 47416382 (-) True AMCG00013936
AMCG00013934 mRNA downstream 215523 47323711 ~ 47368062 (-) True AMCG00013934
AMCG00013942 mRNA upstream 85255 47709213 ~ 47715995 (-) True AMCG00013942
AMCG00013944 mRNA upstream 225321 47849279 ~ 47857162 (-) True AMCG00013944
AMCG00013946 mRNA upstream 242034 47865992 ~ 47868234 (-) False AMCG00013946
AMCG00013945 mRNA upstream 245467 47869425 ~ 47907166 (-) True AMCG00013945
AMCG00013947 mRNA upstream 355631 47979589 ~ 48001071 (-) True AMCG00013947
TU59572 other downstream 382688 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 708215 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1420098 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1500043 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1609274 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 240892 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 343467 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1194025 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1194025 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1194025 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007870 False 3656 mRNA 0.50 20 NC_007122.7 22944661 ~ 23025949 (-)