RNA id: AMCG00013942


Basic Information

Item Value
RNA id AMCG00013942
length 828
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00013942
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47709213 ~ 47715995 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTCAATCCTCCGATACCTCCCCCTGACCCTGTCCCTGCTGGGGGGCTGTCTCTGTGCACCCCCGGGCAACGTGGGGCTCGACAGCCTAAACCTGGAAAACTACGATCTGACCGAGGAGACGGACTGGGAGACCATTCACCTCCTGTACACATACGATGACCTTGAGTCCAAGATCGAAGTGGGAACCGTGGCCCCACCTTCTACCGCTCCGCTAGCCAATCGGAAAACGACGCCGCACAAGACCCCGCCCCCAGCTCTGGAGGAGGAAGTTCCACTCCGCCCACGTCCCACCCAGGTGCCCACAAGACTGGACTTCGGCGGCCCGGGGCTGTTTGGGCCCCAGACTGGCATGGAGAAGCTGAAACACATCGACCTGACGGGGAACCAGATCGCGGAGATGGGTGAGGACGCCCTGCGGACGCTGCCCACCCTGGAGGAACTGCTGCTGCCCGAGAACCGGCTGTGGCGCCTGCCCGAGCTGCCTCCCACGCTGAGGCGCATCGACGTGCGGCACAACCGGCTCATCAGCACCGGCATGCGCCCGGAGGCTTTTAAGGATATGATCCGCCTGGAGTTCCTGTACCTGTCCCACAACTACCTGGACTTCGTCCCTGCTCCCCTGCCCGACAGCCTGCGCGTCCTCAACCTGCAGAATAACAACATCCAGAGCCTGTCCGAGAACACCTTCTGCAATCAACACGACCCCAGCTACATCCGCCGGGCCCTGGAGGACATCCGCCTCGATGGGAACCCCATCAACCTCAGCCACTTCCCCGGCGCCTACGGCTGCCTGCCTCGGCTCCCCACGGGCAGGACGCGCTGA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59711 lncRNA downstream 14319 47689845 ~ 47694894 (-) True G47839
TU59664 lncRNA downstream 163622 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 213529 47495411 ~ 47495684 (-) True G47807
TU59609 lncRNA downstream 481959 47225801 ~ 47227254 (-) True G47766
TU59536 lncRNA downstream 588612 47057539 ~ 47120601 (-) True G47718
TU59780 lncRNA upstream 251430 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 300566 48016561 ~ 48016838 (-) True G47917
TU59896 lncRNA upstream 463272 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 499880 48215875 ~ 48216209 (-) True G47995
TU59936 lncRNA upstream 553349 48269344 ~ 48270564 (-) True G48021
AMCG00013940 mRNA downstream 85255 47583585 ~ 47623958 (-) True AMCG00013940
AMCG00013937 mRNA downstream 137438 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013938 mRNA downstream 144502 47552134 ~ 47564711 (-) True AMCG00013938
AMCG00013935 mRNA downstream 277734 47421308 ~ 47431479 (-) True AMCG00013935
AMCG00013936 mRNA downstream 292831 47410368 ~ 47416382 (-) True AMCG00013936
AMCG00013944 mRNA upstream 133284 47849279 ~ 47857162 (-) True AMCG00013944
AMCG00013946 mRNA upstream 149997 47865992 ~ 47868234 (-) False AMCG00013946
AMCG00013945 mRNA upstream 153430 47869425 ~ 47907166 (-) True AMCG00013945
AMCG00013947 mRNA upstream 263594 47979589 ~ 48001071 (-) True AMCG00013947
AMCG00013949 mRNA upstream 289704 48005699 ~ 48014251 (-) True AMCG00013949
TU59572 other downstream 508316 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 833843 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1545726 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1625671 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1734902 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 148855 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 251430 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1101988 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1101988 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 1101988 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile