RNA id: AMCG00013944


Basic Information

Item Value
RNA id AMCG00013944
length 2138
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00013944
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47849279 ~ 47857162 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCCCCCTTACCAATATGGCTGACAGGGGAGGTTCAAAGGGTCACCCTGGGGAGGTTCAAGGGGCAACTGGGGGACTTTACGAAATACAGGACATTAACTCTAACAATAAACAACCTGGTAGAGGAGGATGCAGGGAAGTACAGATTTGAGTTTGACCAAGATGAAGTTCATGAGGTGGAGCTCAAGGTGTTCGCTAAGCCTGGCCTCAGAGTACCTGAGACAGTGACTGGGATGACTGGGGATCGAGTGGAAATCCTGTGTGAATACAGCCAGGAACACATGAACAAGGAGAAGTACTGGTGCAAATGGAAATATGGACCATCTCTCAATTCTACTGTGAGGCCACACACCACCATCCCGACAACCAGACAGCACACCAGTACAAAGAAGACCCAGAAACCAACAAAGTTGGAAAATATCCCTTATGATTCAACGCTGAACACATCCAGTAAAAACAAGGACATCTTAGAGCTGATTAAAAACCACCCGATTGCAATGGGGATCTTAGGAATCCTGGTTTTGCTCATGTTAATGCTGGCTGCAATAGCAATTAAAAGAGCGCTGGCCAAAGCATCTGGGTCTGCAAGCGCTTCCCAGGACAACGGGGGCAACTTTCGGATGAGAGAAGTCCAGACCACCCCATTGGCCAGTGACAATGTGTACACTTACCACTCCTACTTCCAGCCTGCCGTCACCTCCAACAATGTCAACGTCCACGGCAATGTCGATGAAGACTCCACCGACAGCTCAGAAACGTCAGACAGCTCATGTCCTTGGGAGACCAGGAACCTGTCTAGAAACGACAGCTCGGACGCCGGACGGGCCCTGGGGAGCGCCGGCACTGACCAAATCGGCGACTACGTGAACGTGTCCGAACAGGGGTGGATCGACCGGGAGGACTACGTGAACATGCTGGAAGAGCAAGGGCCGGAGGAAGGAGGAGCTCCTGAGTGGGATCAGAAAGGAGAGGATGACTATGTGAATGTGAAGCCCCCCCTGGAGAGCGAGGACAGTGGGGAAGAGGGGGACGAGGAAGGTGCGGACGGTGACAGCAGCGAGGAGCAGGACGACCCTGAGAACGACGATGACGACGTACAGTACACACAAGTCGTCTTCAAGTAGAGGAGGCTGTGGTGATTTCTGGGTAATGCCTCTCACTTCCTGGGCTTGTGGGAACATGGAGAAGAGGAGCATCATATGCACTCTGAAAggagtaataataaatatgagaAGAATGAGATGAAGGAACtcggattttattttatttttatgattttaagtCCAGGGGATTGTAAATGGAGAGACTTTTCCGAGGACTTTGTGATTGTACAGATGTTTGCCGCAACACTGACTTATCCATTCATGTATCTGGCCTTGGTGGAAGTAAGTGACTATGAAATAACTGGCACAGTGAAAACACCTGCAGCTTTATTGCCGTGTGTGGGCCACACCCCCAATCTGGACTGATGCAGGGACTGTGGCAAACCGGACACTGGACACTGGATGGGCCAGTTCAACAGAAGTTCAGTCACTCTCAGGTCATTGGCTTGGCGGCAGTTTACCTCGGCCTACAGCCCTCTGAGTTATCAAACGTTGCAGTGTGAAAGAactgtattattcttattttcacGTGGGGGCTGGTGGTTAGAGTGCAGGGTGTGTTGCTGAATCATTCTGGGGAGGAAATGGAAACGTAGGAGTCGAACCGGGAATATGGGACTCTTCGgatcttgtttttattgttttgtatgtctggtaacttaataaagaaaggCTTTATATCAGACGGTTACTTTGCAggaataaaagcaataaaaggaaaaataaaagcaagaaaattaaaaaataagacacaGGGTCAACGAGAACAAAATCTTATCTGATGCTGCTTCTGTCTCGTCCGTCTTTTGGTAATTGTGTGTTTCAAGATGagtaacaaatgtatttgtaggCTATGAATGACGTATAGGCAGTACAGTCCTAATCTTTAATATAACTGCtccttaaaatgtttatttacatataatgtTTACTTGGTACAGTCCCAGTATTTACTGTCTCACAATATCATGATTTGTTGGTGGcatatttagtaaaaaaatatagtatctatattttttatataaatgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59711 lncRNA downstream 154385 47689845 ~ 47694894 (-) True G47839
TU59664 lncRNA downstream 303688 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 353595 47495411 ~ 47495684 (-) True G47807
TU59609 lncRNA downstream 622025 47225801 ~ 47227254 (-) True G47766
TU59534 lncRNA downstream 774251 47071343 ~ 47075028 (-) True G47717
TU59780 lncRNA upstream 110263 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 159399 48016561 ~ 48016838 (-) True G47917
TU59896 lncRNA upstream 322105 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 358713 48215875 ~ 48216209 (-) True G47995
TU59936 lncRNA upstream 412182 48269344 ~ 48270564 (-) True G48021
AMCG00013942 mRNA downstream 133284 47709213 ~ 47715995 (-) True AMCG00013942
AMCG00013940 mRNA downstream 225321 47583585 ~ 47623958 (-) True AMCG00013940
AMCG00013937 mRNA downstream 277504 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013938 mRNA downstream 284568 47552134 ~ 47564711 (-) True AMCG00013938
AMCG00013935 mRNA downstream 417800 47421308 ~ 47431479 (-) True AMCG00013935
AMCG00013946 mRNA upstream 8830 47865992 ~ 47868234 (-) False AMCG00013946
AMCG00013945 mRNA upstream 12263 47869425 ~ 47907166 (-) True AMCG00013945
AMCG00013947 mRNA upstream 122427 47979589 ~ 48001071 (-) True AMCG00013947
AMCG00013949 mRNA upstream 148537 48005699 ~ 48014251 (-) True AMCG00013949
AMCG00013950 mRNA upstream 164902 48022064 ~ 48024332 (-) True AMCG00013950
TU59572 other downstream 648382 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 973909 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1685792 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1765737 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1874968 45963891 ~ 45974311 (-) True AMCG00013883
TU59752 other upstream 7688 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 110263 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 960821 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 960821 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 960821 48817983 ~ 48821156 (-) True AMCG00013991

Expression Profile