RNA id: AMCG00013946


Basic Information

Item Value
RNA id AMCG00013946
length 294
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00013946
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47864850 ~ 47868863 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCGGGGTGTTGCTGTACTTTGACTCCGTCCTGTTGGCATTTGGAAATGTCCTGTTCCTGAGTGGCCTGGCTGTGATCATTGGCctgaggagaaccttccagttCTTCTTCCAGCGGCAGAAGCTCCGAGCCTCCACCTTCTTCCTGGGTGGCGTGGCCTTGGTGCTGCTGCGCTGGCCCATCATCGGCATGGCAGTTGAGGCCTACGGCTTCGTGCTGCTGTTTAGGAGCTTTTTCCCCGTGGTGTTCGGCTTTCTTGGGTCCTTCATAAACATCCCCTTCATGAACTCG

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59711 lncRNA downstream 171098 47689845 ~ 47694894 (-) True G47839
TU59664 lncRNA downstream 320401 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 370308 47495411 ~ 47495684 (-) True G47807
TU59609 lncRNA downstream 638738 47225801 ~ 47227254 (-) True G47766
TU59534 lncRNA downstream 790964 47071343 ~ 47075028 (-) True G47717
TU59780 lncRNA upstream 99191 47967425 ~ 47974915 (-) False G47896
TU59811 lncRNA upstream 148327 48016561 ~ 48016838 (-) True G47917
TU59896 lncRNA upstream 311033 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 347641 48215875 ~ 48216209 (-) True G47995
TU59936 lncRNA upstream 401110 48269344 ~ 48270564 (-) True G48021
AMCG00013944 mRNA downstream 8830 47849279 ~ 47857162 (-) True AMCG00013944
AMCG00013942 mRNA downstream 149997 47709213 ~ 47715995 (-) True AMCG00013942
AMCG00013940 mRNA downstream 242034 47583585 ~ 47623958 (-) True AMCG00013940
AMCG00013937 mRNA downstream 294217 47567103 ~ 47571775 (-) True AMCG00013937
AMCG00013938 mRNA downstream 301281 47552134 ~ 47564711 (-) True AMCG00013938
AMCG00013945 mRNA upstream 1191 47869425 ~ 47907166 (-) True AMCG00013945
AMCG00013947 mRNA upstream 111355 47979589 ~ 48001071 (-) True AMCG00013947
AMCG00013949 mRNA upstream 137465 48005699 ~ 48014251 (-) True AMCG00013949
AMCG00013950 mRNA upstream 153830 48022064 ~ 48024332 (-) True AMCG00013950
AMCG00013948 mRNA upstream 163158 48031392 ~ 48048066 (-) True AMCG00013948
TU59572 other downstream 665095 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 990622 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1702505 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1782450 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 1891681 45963891 ~ 45974311 (-) True AMCG00013883
TU59777 other upstream 99191 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 949749 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 949749 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 949749 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1616266 49484500 ~ 49484767 (-) True G48373

Expression Profile