RNA id: AMCG00013967


Basic Information

Item Value
RNA id AMCG00013967
length 1095
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00013967
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48455903 ~ 48479577 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATTTGCAAAAACAAGCGAGTACTTTCAGAGGAGCTCTGGCTGCAACACTGGCTTCGGTATGGGCAACGACCAGCTGTGGATCCTGGGTGATGTCTTCCTCAGGGAGTGGTACTCCATCTACGACAGGACAAACAACAGAAGGAGCTCTGGCTGCAACATTGGCTTCGGTATGGGCAACGACCAGCTGTGGATCCTGGGTGATGTCTTCCTCAGGGAGTGGTACTCCATCTACGACAGGACAAACAACAGAGTTGCCGGCATTGTGGACACCAACCAGATTTTCTGTCTGAGTGAGAGTGAGGCTAGTTTCATGTACTACATGGAGGCTGATGGCATCCTGGGTCTGGCCTTCCCCTCCATCGCTTCCTCTGGGGCTACCCCCGTCTTCGACAACATGATGAACCAGGGCCTGGTCTCTCAAGACCTCTTCTCCATCTACCTGAGCGGACTACTCACACATTTCCCCGGATGGTACTTCTCAACACAGCTGGCATACTTTGGAGTCATCTCCATCGGAACCCCCCCACAGTCCTTCAAGGTCTTCTTCGACACTGGCTCCTCCAACCTGTGGGTGCCCTCCGTCTACTGTAACAGTGCTGCCTGCGCAGAAAGCTCATTGAGTCCAGCGCAGCGGGCCGGCAGCGTCCTGACCCTCGGCGGTATCGACCCCTCTTACTACAGCGGCCAGATCAACTGGATCCCCCTGTCCTCCGAGACCTACTGGCAGATTTCCATGGACAAGGTCACCATCAATGGGAACCTTGTGGCCTGCTCTGGCGGCTGCCAGGCTATCGTGGACAGCGGTACCTCTCTGGTTGTTGGGCCAAATAGTGACATCAGCAACATCAATGCTTGGGCCCAGGTGAACTGCAACAATATTGGAAACATGCCCAGTGTGGTTTTCACCATCAACGGGATTGACTTCCCCCTGCCCTCCTCTGCCTACGTATTCCAGAGAAGCAGCGGCTGCTCCACTGGCTTCGGCAATGGCGGCAGTCAGCTCTGGATCCTGGGAGATGTCTTCATCAGGGAGTACTACTCCGTCTTTGACAGGAGCAACAACATGGTGGGACTGGCCCAGGCCGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60003 lncRNA downstream 87534 48366059 ~ 48368369 (-) False AMCG00013964
TU59981 lncRNA downstream 111410 48308564 ~ 48344493 (-) True G48044
TU59993 lncRNA downstream 116293 48329718 ~ 48339610 (-) True G48047
TU59940 lncRNA downstream 178582 48276736 ~ 48277321 (-) True G48025
TU59936 lncRNA downstream 185339 48269344 ~ 48270564 (-) True G48021
TU60047 lncRNA upstream 26294 48505871 ~ 48506136 (-) True G48092
TU60061 lncRNA upstream 65660 48545237 ~ 48546275 (-) True G48106
TU60148 lncRNA upstream 165613 48645190 ~ 48651229 (-) True G48175
TU60289 lncRNA upstream 547707 49027284 ~ 49050432 (-) True G48275
TU60404 lncRNA upstream 874115 49353692 ~ 49354535 (-) True G48363
AMCG00013966 mRNA downstream 16775 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013964 mRNA downstream 80807 48366043 ~ 48375096 (-) True AMCG00013964
AMCG00013965 mRNA downstream 191530 48261347 ~ 48264373 (-) True AMCG00013965
AMCG00013959 mRNA downstream 228792 48220232 ~ 48227111 (-) True AMCG00013959
AMCG00013957 mRNA downstream 243875 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013972 mRNA upstream 37356 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013973 mRNA upstream 42973 48522550 ~ 48524089 (-) True AMCG00013973
AMCG00013974 mRNA upstream 106054 48585631 ~ 48588321 (-) True AMCG00013974
AMCG00013976 mRNA upstream 171712 48651289 ~ 48663453 (-) True AMCG00013976
AMCG00013979 mRNA upstream 266316 48745893 ~ 48754827 (-) True AMCG00013979
TU59777 other downstream 480988 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 587040 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1255006 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1580533 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2292416 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 338406 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 338406 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 338406 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1004923 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1015150 49494727 ~ 49498630 (-) True G48392

Expression Profile