RNA id: TU60040


Basic Information

Item Value
RNA id TU60040
length 2276
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00013967
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48455903 ~ 48479577 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNACACTCAATGGATACAACTTTGCTCTCCCTCCATCTGCCTATGTATTCCagAGGAGCTCTGGCTGCAACATTGGCTTCGGTATGGGCAACGACCAGCTGTGGATCCTGGGTGATGTCTTCCTCAGGGAGTGGTACTCCATCTACGACAGGACAAACAACAGAGTGGGTCTGGCCAAGGCTATTTAAAGTGCCCTTCTTCTGGGGTCAGAGAACAGCTGTTCCAGAATCACTTTCAATCACTTTCTCATCCTTCATGAAAACACTTGGATTCCCACAAAATTCCcctgtaaataataattttctttgtacattttgccaatagcaattgcattttcaaagacttctCCCACTTTAtggtggactttattcaaatgataaTGCAATTGTCTCTTTGAAAATATGTCTTAGCTCTTACGCCATTTACGGGACGACatgtaaatgcaaatgtcaaACGCTATTGCAAATACATGATTATGCTCTACTGACCTCTAACCTTTGACCTCTGAACTTTTGTGCACCAACCCACACGCTCACACAGGACTTGAAGCGCTGCCATTGGTCAGCGGTCTCTGTTCCCTGCTCTCTGTTCTGTTCAAGTGCAATCCCGGAAATCAGGTGGCTTGtggaattatgattattttgaatgtgatgcatttaatgaaaaaaaatataaaaaattaatacatatgatGACACTATTGACTGTAAACACTTTACAGGGAAGTACACTGGAGATGCACTGTATAGAGCTACAAGTGtaggtcctgtaggctaattGTATTTCCCGAACAAGACGTACTTGTTAATACAGAACGCAATAATGTCAGCTTTTGTGACAAATCACTTTTGACATTCATCTCATGAACACTTCCGAGTTCTGTCACCAGATGTCTCCCTTGCCCTTCAGAAGCCATGTCCAGATCTCCGCTCCTTATCATTCATTGATTAATTATCTCCACTTGTTCCTTAGCCCTTTATAGCCCTTTGTTGCATTCCCTCCTTGTGATGTATTGTCTGCCATTTAGCTGCATTACCAAGCCTTAGTCATTGTTGTATCTTGTCTACTCTTGTTTTGACCTAAGCCTGCCTCTTGTTACCTAGAGTCTCCTTTCAAGGATCCTGTGTCTGCACCTGAATCCCCATCCCAGCTGTAATCCCCAGTACAccacagatacacagagagcTTAACTCTCATTAATTGCACCTGTATTTACTAAGTTTTAATGAGAATATAAAGAGAAGTTTCTTAGCAAATTGCACATGGTGTGCCATTCAGTCATCACCCCTGATTCCCCTGTTTACCCTTCCCACCTCTCTCCTGTTTCCTGTACTCATCAATCCTTGTATATATACTCCTTTGTTCTGTTCACAGGATGCAAAGTCTTGTTTGACCTCACCGCAGCATTACTGAGCAGACTTTCCTACTGTACTCTGTTTTCCTGTGTTTCAACCTTCTCTTTGTCCTACATCTCCAGATCTTCCTAGTTTGCCTGGTTTGCCCGATCGATAGACCTTCCTTCTTTGACCCCGACTATACCTTTTGCCTAGTCCTCTTTGTTCTGCCTGCTAAACTCCTGTTCCACAGTCTGTTTCCAGACTTTCACTCTGCGACTGCAATTGGATTGAATTCTGACCAAGAGAGCTGAGTTTTAAgtaatttttctgtttttatcagGTAAGCCCCAGGAGGGCTCTGTTTCTGGTGCACCTGATTGGAAAtatgactgactgaatgactggtTCATGTTATCATCTTAAATCTAGATTCCCTGCCATTACATATGTTTGACAAAGATAACCCAATAACCCGGAATACTGAACTGATCTTGATTTGAAAGTCATTACCTGAAATAAAGATTAATGTTGGGTAGCTATTATATGTTTCACTATCAGTGCACTGAAGTGATTGAAATGAACATGATTGAAAACTGAAGTGATTTAagtttgataaaataaatgggTTGTAATCactcaaaaaattaaaaaagttaattcgCCTCAAATTTTCTTTGATGTGTACTGATTTGCCACTTTAAGTTTACAGTGCTCAATCACTTCAATTAATTTTTCTGTCTGACATCACGCACGTGCGTATGTGCTCCATCTCCACCAAGCCCGCGAATTCTGCCATTTTTGCTCTGCTTGCCTCAGAAAAGTATGCAGAGAAAGGTTTGCAGGTACAAATTAGTTACAgagcatccggaaagtattcacagcgcttcacttttttcacattttgttatattacagccttattccaaaattgattaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60003 lncRNA downstream 101964 48366059 ~ 48368369 (-) False AMCG00013964
TU59981 lncRNA downstream 125840 48308564 ~ 48344493 (-) True G48044
TU59993 lncRNA downstream 130723 48329718 ~ 48339610 (-) True G48047
TU59940 lncRNA downstream 193012 48276736 ~ 48277321 (-) True G48025
TU59936 lncRNA downstream 199769 48269344 ~ 48270564 (-) True G48021
TU60041 lncRNA upstream 6516 48479448 ~ 48484310 (-) True G48086
TU60047 lncRNA upstream 32939 48505871 ~ 48506136 (-) True G48092
TU60061 lncRNA upstream 72305 48545237 ~ 48546275 (-) True G48106
TU60148 lncRNA upstream 172258 48645190 ~ 48651229 (-) True G48175
TU60289 lncRNA upstream 554352 49027284 ~ 49050432 (-) True G48275
AMCG00013966 mRNA downstream 31205 48428903 ~ 48439128 (-) True AMCG00013966
AMCG00013964 mRNA downstream 95237 48366043 ~ 48375096 (-) True AMCG00013964
AMCG00013965 mRNA downstream 205960 48261347 ~ 48264373 (-) True AMCG00013965
AMCG00013959 mRNA downstream 243222 48220232 ~ 48227111 (-) True AMCG00013959
AMCG00013957 mRNA downstream 258305 48202579 ~ 48212028 (-) True AMCG00013957
AMCG00013972 mRNA upstream 44001 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013973 mRNA upstream 49618 48522550 ~ 48524089 (-) True AMCG00013973
AMCG00013974 mRNA upstream 112699 48585631 ~ 48588321 (-) True AMCG00013974
AMCG00013976 mRNA upstream 178357 48651289 ~ 48663453 (-) True AMCG00013976
AMCG00013979 mRNA upstream 272961 48745893 ~ 48754827 (-) True AMCG00013979
TU59777 other downstream 495418 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 601470 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1269436 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1594963 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2306846 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 345051 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 345051 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 345051 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1011568 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1021795 49494727 ~ 49498630 (-) True G48392

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1837433 True 1031 lncRNA 0.45 2 NC_048583.1 24255245 ~ 24256435 (-)