RNA id: AMCG00013980


Basic Information

Item Value
RNA id AMCG00013980
length 4830
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00013980
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48757586 ~ 48776138 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGGGATGTGCGGAGTGGATGCGCAGAaccggggagagagagagagagaggtggtgcGAAACCAGGCTGCAGTGACGACAGCATCCATAATTAAAGAGGAGATACAAGTGCAGGAAAGACACCCTGACACACATGAGTGCCGTCGAGCTGCCCGCCTGCAGGAACACACTGTGCTGCCAATAAGGGCACCGACTGCCTGGCACCGCGCACTCAGCGCCTCAGCGCCCGCTGTACCGAGCCATATCGGGCGCAATGTCGGACTCGGCCGGGGACGCGAAGTTGGAAGTGAAGCAGGCCAGCAAAGAAGTGAAGGAGAGCGAGAATGTGGCGGAGAAATACTCGGCCATGACCGTGAGCAAGAACAGCGAGATGTCCAGGAGCGACCTGTCCGCCGCCTTCAGCGCCGTCACCTCCCACAAGCCCGTCAAAAAGCAAATCCAGTTCGCAGAGGACAAGCAGGAGTTCAGCCGCTTCCCCACGAAGGCGGGCCGGCGCTCGCTTTCTGACGACGAGACATCCCCGCGGGACAAGGTGCAGAGCAACTCCAAGGGCGGCAGCGACTTCTGCGTCAAGAACATCAAGCAGGCGGAGTTCGGCCGGCGTGAGATAGAGATCGCCGAGCAGGACATGTCAGCACTGATCTCTCTGAGGAAGAGGGCGCAGGGCGAGAAGCCGCTGGCTGGGGCCAAAATCGTGGGCTGCACTCACATCACTGCCCAGACAGCGGTGCTGGACGACGGGGGGGACCTGACACACTGGGTGTACAAGAAGTACCCCAACGTGTTCAAGAAGATCCGCGGCATCGTGGAGGAGAGCGTGACAGGGGTGCACCGCCTTTACCAGCTGTCCAAGGCCGGCAAGCTGTGCGTCCCGGCGATGAACGTCAACGACTCAGTGACCAAGCAGAAGTTTGACAACCTGTACTGCTGCCGGGAGTCCATCCTAGACGGTTTGAAGAGAACCACAGACGTGATGTTCGGGGGCAAGCAGGTGGTGGTGTGTGGATACGGAGAGGTGGGGAAGGGCTGCTGTGCTGCGCTGAAGGCCCTGGGCGCCATTGTGTGCATCACCGAGATCGACCCCATCTGCGCCCTGCAGGCCTGCATGGACGGCTTCCGGGTGGTCAAGCTGAACGAGGTGATCCGCCAGGTGGACGTGGTCATCACCTGCACAGGCAATAAGAACGTGGTGACCCGGGACCAGCTGGACCGCATGAAGAACGGCTGCATCGTGTGCAACATGGGCCACTCCAACACCGAGATCGACGTGGCCAGCCTGCGCACGCCAGAGCTCACCTGGGAGAGAGTGCGCTCGCAGGTGGACCACGTCATCTGGCCCGATGGGAAGAGGGTTGTCCTGCTGGCCGAGGGCCGCCTGCTGAACCTGAGCTGCTCCACGGTCCCCACGTTTGTCCTGTCCATCACAGCCACCACACAGGTGAGCGAGAGACAGAGCCCCCCGAgtcactggactggactgcctGTGGGcgtccttGCGCTGGCGCTGATTGAGCTGTACAACGCTCCCGAGGGACGCTACAAACAGGACGTGTATCTGCTGCCCAAGAAGATGGACGAGTATGTTGCCAGCCTGCATCTGCCCACCTTCGACGCCCACCTGACAGAGCTGTCTGACGAGCAGGCCAAGTACCTGGGCCTCAACAAGAACGGGCCCTTCAAACCCAACTACTACAGATACTAGTTGCGGACAATGGCAGTAAAGTCCAGACGACCACCATGTCTACGGAGTGGGGGGGTCCCAGGCGGAGGGGGCTCGGAAGACCTCGAGGGGGAAATACTCCGACAACAAACGAGCGagagattttacattttcatttcatttttagtttttcatttcatttcatttttgtactttgtttcaCTTCTCACCCCCCCCACCGGCCCCCTCGGACTCTGCAGCCGCTTCAGCCCCCCCGCTAAACACTTTATCTTCTATCGTTTATTTGTTAAtccactttaaaacaaaagcaaaattatataatttgaaagaCAATCAGAAATGTAGGCTGTTtgtgaaataacttgaaatggtGCCAAGCAATCTGTTAGTGGAGGTTCTGATCCAGTTCgatttttcttgtattattatgattattctcGTTTAATGTCTTTGCACTTTCAAAGCTCAACACACATTCCACACTGAGAGACTGTGGGACAGAGGTCTGGACCGCTGACCCCCTGCAGAGCAGACTCTGACTATTATTACTGTGATTGTCATGATTGTTATTCATATTGCACAGATCACTTGAGCTGTGCTTCTGGATGAGGGCGCCACGGTGTGCAACGGCAACCTTTACTAATTACACAATAACAGGTATTTTGCTTAAATAGTTGTTGCGCTGTGTGGGGTTGGTGTAGTGCTTATTACTGCTGTGTccatgtctgtctctgtgtgtgtctgtttgtccggctgtgtgtgtctgtctggctgtctgtctgtgtgagtgtgtgtgtgtgtgtgtgtgtctgtctggctgtctgtctgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtcaggcTGGTTGTCTGACTCCAGCCCTCTGTCCCACCCACCCTCTTAGGCTCTCTGTGATGTCATAGTAGGCATCTAGACCACAGACATTCTGGACGATTTATTTTAGCGTGGTATCTGGCGAATCGATGCCCCGTTTACAATGgggtttttttaaatcttttttaataatttgacgTGTGTCttttgattgttattattttgtttctgtgccGAATCCTCTCTGACCTTATATGTCCTTAATGTCCTTCCTCGCCGCCGTCTGTTCCCCCACACTGCTTCCCGACACTCGCTGCACCAGcgcacattttaaacagtttaaacaaaaggaacaaaaagattaataataaattatacattctaaatatatttatatttgaaaaaatagcCATTCAAAATGAAGAGCAATGAGGTTAGATGGGTAGATATAGACAGATAGAGTAAGTAGGCGAGTTGGAAATATTCCTAATTGTTCTGagataaaaaagtgaaatggaCGAGTTTAAGgacaaaaagtgttttaatctTCAGACTTGAACTGTAAAGGTGTCTTCTAGCTGTTGAGTTGCTCTGCTGTGTGTCGCCCAGAGCgctgtggagggggggggggttgagcTTGACCTTTCACCTCTCAGGTCCAAGCAGGGGTGTCAGTCCATGCCTGTGTTGCCATATACGTAGATTAATAAGATGAACTAATTATTGAATTGAGTTGAGCAGCTGAGAGTTGGGGGGGGTACGATCCACACCTAAGGCCTTTAAGCAGCAGGAGTTGTGCGGCCCCAGCCTCAGCTGCCACAACCGAGACCAACCACAAACCAGTCGACCAATCATGTGGCTCAGACCACATACTCAACACAGGGACCCCAGGCTGAGGCCCCAGGGGTACAAGCTGTGTGGCTGTGCCTTTCTGACCCCACCaaccctgtccctgtcccctgTCTGTCTCCTCCCTCTAGTGCCCTGTCTGTCCCCTGTCCTCTGTCTCCTCCCCCTAGTGCCCTGTCTGCCCTTCACGTCCTGTTTTGGAGTCTGTGGAAGCATCCTGGTTGTTTCACATCTCCATAGCTGCGACCCCCCGTGCAATAGTCATTAACTGACTGTTTGCTCTTCTTTCTGTTTGTAAcggtgtattttattaaacagtttCTGTTCTTCCGTCTCTGAGACCCGTGTGACAGGCCCCTCCCCTCCCCGCTTGCAGAGTTGCTCAGATTGAATCCAAACATTGAGCCGCCTACGCACAGAACCCGCAGAGACTCGGGAGCAGCTGCGGTGGTTCGGTCCGGATGCACTCGCTCCTTCCCATAAGCATCACTGCTGGTAGCTTTCTTGTGCTgctgggccgggccgggccCTGCTCTCTGGCTCCAGTGCTTCTCTCGGCTCCTGCTGGTGTCAAACCAAaacgcacagacagacagacagacagacaatgcCATTAAAAACAGCTGATAATTAATCTTTGTTCTTGCCTTGAAGTGCACACTGACTGGGGGGGAGGAGCTCGCAAGGCCAGCTATTTTtatatcatttaatttaattctgttgaagaaaagaaaatggtagAAATGTCAAAgatttttaaagaacagaagttgttttgtgtttgtttttcagagggTTAGGTTTGTGTGTCGGACATTGTAGTGCGTGGCTCTTGTGAGTTCCCCCCGGTGTGCATTGTTCTCTGGTGGTTTTCACAGAGACGGGCAATCGCTACAGCCACTGTGACCGACGACACTCGATTGCCTTGGTGTCGTTATTTTGCTATGGTTCCTTTTTACCTGAATGATTTCATATGGGATCTTAGTGCAGCCCTGCTCGGGCAAATGTAGTGTTAATGTTGATCATTtgcttaaaacaaattataacgTTTTTAATTAGGAGCCATTGGCCTGACGAATGCAAACTCCACAGTCGACTGTGACGTGTTCTATGATTTGTGTGTGatgatgatttttattattatttctctgaaGATGGACTATCACCCTCTCATTCCAGTATATCTTTCCAttggtttttaaatgaaaaaaagcaacaatcTAACCTTCCATTTCCATCatgaaataaaaggaaactgagtgaagaaaaaaaaagagaatacaaATTTTGGAGATGTGCATGGAAGCATAAGTCACTTATTTTTAAAGTCATGATTATTGTCGCCATCTTTTCCAATAAAGAAATCAATGAGaattaaaaatcacttttgtGTTGGTGTAAAATCACATACTGTCACATTAAAACCGAAACTTTCAAAGTCCA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60148 lncRNA downstream 106357 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 211311 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 251450 48505871 ~ 48506136 (-) True G48092
TU60041 lncRNA downstream 273276 48479448 ~ 48484310 (-) True G48086
TU60040 lncRNA downstream 284654 48470333 ~ 48472932 (-) True AMCG00013967
TU60289 lncRNA upstream 251146 49027284 ~ 49050432 (-) True G48275
TU60404 lncRNA upstream 577554 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 676895 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 761590 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 765221 49541359 ~ 49545278 (-) True G48398
AMCG00013979 mRNA downstream 2759 48745893 ~ 48754827 (-) True AMCG00013979
AMCG00013976 mRNA downstream 94133 48651289 ~ 48663453 (-) True AMCG00013976
AMCG00013974 mRNA downstream 169265 48585631 ~ 48588321 (-) True AMCG00013974
AMCG00013973 mRNA downstream 233497 48522550 ~ 48524089 (-) True AMCG00013973
AMCG00013972 mRNA downstream 236849 48516933 ~ 48520737 (-) True AMCG00013972
AMCG00013981 mRNA upstream 362 48776500 ~ 48785225 (-) True AMCG00013981
AMCG00013987 mRNA upstream 16236 48792374 ~ 48792875 (-) True AMCG00013987
AMCG00013986 mRNA upstream 19081 48795219 ~ 48807587 (-) True AMCG00013986
AMCG00013991 mRNA upstream 42485 48818623 ~ 48819833 (-) False AMCG00013991
AMCG00013990 mRNA upstream 75150 48851288 ~ 48852970 (-) True AMCG00013990
TU59777 other downstream 782671 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 888723 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1556689 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1882216 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2594099 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 41845 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 41845 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 41845 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 708362 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 718589 49494727 ~ 49498630 (-) True G48392

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_01966833_01995697.mRNA False 2450 mRNA 0.47 18 CI01000066 1966138 ~ 1995715 (+)