RNA id: AMCG00013986


Basic Information

Item Value
RNA id AMCG00013986
length 2656
RNA type mRNA
GC content 0.63
exon number 18
gene id AMCG00013986
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48795219 ~ 48807587 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCATTTGCGGGTGTGGGCGGGGCTGAGGCAGCGCCCGTCCGTGCGGGAGCTCCCGGGCTGCCAGTCGGTCAGGTGGTGCGCTGGAGCTGCGGCGAGGAGCGCCTTCCGAGCCGGAGACAGAGCCGGAGACAGAGCCGGAGAGGCACCTCTATGGACGTTTAAGCCTCGAcagctgcgtgtgtgtgtccccCTCGCTGGAGCCATGCCCGCCCTGTCGCGCTGCctggcgctgctgctgctgctgtgctccCTGGCGCTTTGTGTGGATTTCCAGGACCGGACCCGCAGGAGCCGCGCCGACACCTTCGTGAAGACCCCCGGGGCGCAGGAGCCGCACAAGCGGGGCAGGAGGAGCGCCGACCCCCCGGACACCTGCGAGGCGCTGCGCGGGTACGACGCCCGGCTGGCGAACAACACGCACCCGTACGTCTTCAATGACCTGAGTGGCTCCGTGTCTCTGGCCTGGGTGGGCGATGGCACCGGGgtGGTGCTGGCGTTGACCACCTACCAGGTGCCGTTCTTCCTGGTGCGATTCGGCCAGTCCAAGCTGTACCGGAGtgaaaacTACGGGAAGTCGTTTCAGGACGTGACGACTTTGATCAACAACACCTTCATCCGCACCGAGTTTGGCATCGCCATCGGCCCAGAGAACTCTGGGAAGGTCATCCTCACTGGTGACGTGTCGGGCAGCAAGGGCTCCCGGATCATCCGCTCGGTGGACTTCGGGAACACATTTACCCGCACGGACCTGCCCTTCCAGCCGCTCATGCAGATCAGCTACAACCCCCGCAACGCCAGCGTGCTGCTGGTCCTCAGCATGAAGAACGAGCTGTGGATCTCTGAAAACTTTGGTGAGAGCTGGAAAAACATCCACGACATGGTCTGCCTGGTGAAATGGGGCGCTGACAGCACCATCCTGTTCACCACCAGCCCCAACGGCTCCTGCATTGACAGGGGGATGCTGGAGCTAAAGAAGACGTCAGATTTTGGCAGGACCTTCCAGGCCATTGGCAGTAGGATCTACTCGTTCGGGCTGGGCGGGCGATTCGTGTTCGCCTCTGTCATGACTGGACAGGGCACACAGAGGGTGATCCACGTGTCGGGGGACGGGGGCGAGTCCTGGGACATGGCGCAGCTGCCCCCTGTCGGGCACGAGCAGTTCTACTCCATCCTCGCCGCCAACGACGACATGGTGTTTATGCACGTGGACGAGCCAGGCGaCTCAGGCTTCGGCACGATCTTTGTGTCGGATGACCGTGGGACGGTTTACTCCAAATCCCTGGAGCGCCACCTCTACACCACCACCGGGGGCGACACTGACTTCACCAACGTCACCTCGCTGCGCGGTGTCTACATGACCAGCGTCCTGGCCCTGGATGGCTCGGTGCAGACGGTCATCTCGTTCGACCAGGGCGGGGAATGGCAGCCCATCCGGAAGCCGCAGAACAGCCAGTGCGACTCCACCGCCAAAGACAAGGACATGTGCAGCCTGCATATCCACGCCTCCTACAGCATCTCGCAGAAGCTGAACGTGCCCATGCTGCCGCTGTCGGAGCCCAACGCCGTGGGGCTGATCATCGCACACGgCAGCGTGGGCGACGCGATCTCCGTGTTGACGCCGGACGTGTACGTGTCGGACGACGGCGGGTACACCTGGGCCCGGGCCCTGCGTGGGCCGCACCACTATGCCATCCTGGACTCGGGGGGGCTGCTGGTGGCTGTGGAGCACTCGCCCTCGCTGCCCATCAGCCACATCAAATTCTCCACGGACGAGGGGCAGTGCTGGCACAACTACACCTTCACCAGCTCACCCCTCTTCTTCACCGGCCTGGCCTCCGAGCCCGGCGCACACTCCATGAACGTCAGCATCTGGGGTTACCGGGAGTCGCTGCTCGGCCAGTACTGGGTCTCCATCACCATCGACTTCAACGATCTGCTGACGCGGGACTGCGATGAGAAAGACTACGTGCCCTGGCTGGCCCACTCCAACGACCTCAGCGACCCCGAGGACGGCTGCATGCTGGGATTCAAGGAGAACTTCCTGCGGCTGCGCAAGGACTCAGTGTGCTGGAACGGCCGGGACTATGTCGTCAACAAGCAGCCCACGCCCTGCCCCTGCACCCTGGATGACTTCCTGTGATACCGGAAGATCCCGGGAGACAAGTGTGAGGGTGGGATGGTGCTGGAACGCCGGGAGATTGATCTGAGCAACTACTGCGTCAGCAACCTGCTGGGCTCAGAGACGCTGacNNNNNNNNNNTCCTCCAGCGCCGCCCCGGTGGTGGTGGCTGTGATCGCGGTGCTGCTGGCCTGTGTGGTGGGGGCCGTGCTGTTCGTCAAGAAATACGTCTGCGGGGGCAGGTTCCTGGTCCACAGGTACTCGGTGCTGCAGCAGCACGCGCAGGCCAACGGCATCGAGGGGGTGGATGAGCTGGACGCCAACGCGGCCGAGACGGGCAAGACAGAGTACCACGACGACTCCGACGAGGCACGGCCCCTGCGCACACAAAACACTGGACACTCGCACAGCACCACACACATCACGCACACTGCTGACACAACACTAGACAAACTGCTGAAGCAATACCGGTTACACACGTGTGCATCGAGTGAGCGCTGTTTTCTGTGTCTGCAGGACCTGCTGGAGTACTGA

Function

GO: NA

KEGG:

id description
K12388 SORT1; sortilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60148 lncRNA downstream 143990 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 248944 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 289083 48505871 ~ 48506136 (-) True G48092
TU60041 lncRNA downstream 310909 48479448 ~ 48484310 (-) True G48086
TU60040 lncRNA downstream 322287 48470333 ~ 48472932 (-) True AMCG00013967
TU60289 lncRNA upstream 219697 49027284 ~ 49050432 (-) True G48275
TU60404 lncRNA upstream 546105 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 645446 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 730141 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 733772 49541359 ~ 49545278 (-) True G48398
AMCG00013987 mRNA downstream 2344 48792374 ~ 48792875 (-) True AMCG00013987
AMCG00013981 mRNA downstream 9994 48776500 ~ 48785225 (-) True AMCG00013981
AMCG00013980 mRNA downstream 19081 48757586 ~ 48776138 (-) True AMCG00013980
AMCG00013979 mRNA downstream 40392 48745893 ~ 48754827 (-) True AMCG00013979
AMCG00013976 mRNA downstream 131766 48651289 ~ 48663453 (-) True AMCG00013976
AMCG00013991 mRNA upstream 11036 48818623 ~ 48819833 (-) False AMCG00013991
AMCG00013990 mRNA upstream 43701 48851288 ~ 48852970 (-) True AMCG00013990
AMCG00013994 mRNA upstream 110810 48918397 ~ 48925913 (-) True AMCG00013994
AMCG00014000 mRNA upstream 485540 49293127 ~ 49298717 (-) True AMCG00014000
AMCG00014003 mRNA upstream 495035 49302622 ~ 49310125 (-) True AMCG00014003
TU59777 other downstream 820304 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 926356 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1594322 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1919849 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2631732 46160539 ~ 46163487 (-) True G47501
TU60179 other upstream 10396 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 10396 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 10396 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 676913 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 687140 49494727 ~ 49498630 (-) True G48392

Expression Profile