RNA id: TU60180


Basic Information

Item Value
RNA id TU60180
length 1314
RNA type TUCP
GC content 0.51
exon number 5
gene id AMCG00013991
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48817983 ~ 48821156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCTGTTTCTGAACCCAGTAAGACCACGTGCACGTCAGATAGAAGCAACCATGTGTTTCAGCTGAAAGTGCAAACTGTGAAAAGCAAACATGTGCAGACTGTGCCGAGCCGGCTGGACACGGAGGACAAACATCCTGCAGAGCCGGAGCTGCGCCGGGGCGACGCCATTTGAACAGTTTAAACAGTTTGGATCTGCCGCGCCGAGGCGGAACTCCTGCCACAGAGGGCGTCGTTTCCCAGCCGGACCGTTTCCTCTGACACCCCAGGGTGTCGTTTCCCCCCGGAGCGCAGGGCCTGAGACACACGCTTCCTGTCCGATCACACACAGCAAAAGCCGACTCATTGAGCCCCAGTCGGACGACCCTCTGATACCATGTTTCTGACCAGATCGGAGTATGACCGAGGTGTGAACACGTTCTCGCCGGAGGGGAGGCTGTTCCAGGTGGAGTATGCCATCGAAGCGATCAAGCTGGGCTCCACAGCCATCGGGATCCAGACGTCGGAGGGGGTGTGCCTGGCCGTGGAGAAGAGGATCACCTCTCCTCTGATGGAGCCCAGCAGCATCGAGAAGATCGTGGAGATTGACACACACATAGGTAGGGCCAGCGCCTCCCGCAGGGGATGGGTGCAGCTGTCAGTGAATGCCAATTACGACTTTGGGGACTTAAATTAGTTAAGTAGTcagttaattaatacattaaatgatggtatgttttgattttgtaacgAACATTCTGAGTTGCAAAGGTCATCTtatgtgtgaatttatttacctattaatttattttaaacgttTGTGTGGTTCATTCACTTTTGGTTTTTGTGTTCCGTGTTCTGTGACGGTGGGGGGGCAATCAGGGCTCATAGCGTGTGTAAGGACACGAGGCAGGAAAGTAGGAAATAAGGCCAGGTTTTATTCTTACAGTGTGCAAACCAACAAAGACTCCTGTTTCAGTCTTAACTAAAACATGTTGAAACATCTCCCGCTATatctaataataacaaaatacaacagcagcCAAACCAAGTCCGTAATCGTTGTCGTATGGCCATAAACAAGGTCCTGATAACCAGAGTACATCCTGTCCCGTACCCGTACTCAGACGCACTGCCAGGCTCTCCTCACTGCCTCTACGCTGCCTGGTTTTATGGAGGAGGGGAGCCAGTCACGTTGGGAACAGCGGGTCAGCTGTTCCGCTATCAGATCCCTCCCCCGGGGTCTGGGGAGGCACAGGCCAGTTCAGGGCGGGTCTGGCCTCAgtgtttatacactcacctaaaggattattaggaacacctgttcaatttctcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60148 lncRNA downstream 166754 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 271708 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 311847 48505871 ~ 48506136 (-) True G48092
TU60041 lncRNA downstream 333673 48479448 ~ 48484310 (-) True G48086
TU60040 lncRNA downstream 345051 48470333 ~ 48472932 (-) True AMCG00013967
TU60289 lncRNA upstream 206128 49027284 ~ 49050432 (-) True G48275
TU60404 lncRNA upstream 532536 49353692 ~ 49354535 (-) True G48363
TU60417 lncRNA upstream 631877 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 716572 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 720203 49541359 ~ 49545278 (-) True G48398
AMCG00013986 mRNA downstream 10396 48795219 ~ 48807587 (-) True AMCG00013986
AMCG00013987 mRNA downstream 25108 48792374 ~ 48792875 (-) True AMCG00013987
AMCG00013981 mRNA downstream 32758 48776500 ~ 48785225 (-) True AMCG00013981
AMCG00013980 mRNA downstream 41845 48757586 ~ 48776138 (-) True AMCG00013980
AMCG00013979 mRNA downstream 63156 48745893 ~ 48754827 (-) True AMCG00013979
AMCG00013990 mRNA upstream 30132 48851288 ~ 48852970 (-) True AMCG00013990
AMCG00013994 mRNA upstream 97241 48918397 ~ 48925913 (-) True AMCG00013994
AMCG00014000 mRNA upstream 471971 49293127 ~ 49298717 (-) True AMCG00014000
AMCG00014003 mRNA upstream 481466 49302622 ~ 49310125 (-) True AMCG00014003
AMCG00013998 mRNA upstream 491154 49312310 ~ 49317429 (-) True AMCG00013998
TU59777 other downstream 843068 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 949120 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 1617086 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1942613 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 2654496 46160539 ~ 46163487 (-) True G47501
TU60423 other upstream 663344 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 673571 49494727 ~ 49498630 (-) True G48392
TU60601 other upstream 898609 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 907348 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 923790 49744946 ~ 49747551 (-) True G48516

Expression Profile