RNA id: AMCG00014001


Basic Information

Item Value
RNA id AMCG00014001
length 6807
RNA type mRNA
GC content 0.59
exon number 51
gene id AMCG00014001
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49354962 ~ 49385651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGAAATGTCAAGTTTTCTCCACATAGGGGATATCGTCTCCCTGTACGCCGAGGGCTCTGTCAACGGGTTCATCAGCACTCTGGGGTTGGTGGACGACCGCTGTGTGGTGGAGCCCGCGGCTGGAGACCTGGACACGCCGCCCAAGAAGTTCCGCGACTGCCTGTTCAAGGTGTACCCCATGAACCGCTACTCTGCGCAGAAGCAGTTCTGGAAAGCCAAGCAGGCCAAGCACGAGAAAGACAAGATCGGGGACGTGGTGCTGCTGCAGAAGCTTCAGCATGCGGCCAACCTGGAGCAGAAGCAGAACGAGGCCGAGAACCGGAAGGTGCTGGGAGAGGTGGTCAAGTACGGCAGCGTGATCCAGCTCCTGCACATGAAGAGCAACAAGTACCTGACCGTGAACAAGCGGCTGCCCGCGCTGCTGGAGAAGAACGCCATGCGGGTGACGCTGGATGGGACGGGCAACGAGGGCTCCTGGCTCTTCATACAGCCCTTCTGGAAGCTGCGTGCCAACGGAGACAACGTGGTGGTGGGAGACAAGGTCATCCTCAACCCGGTGAACGCCGGCCAGCCACTCCACGCCAGCAACTACGAGCTGACGGACCACCCCGGCTGCAAGGAGgtgGTCCATCACGACCCATGCAGGGGCGGCGCTGGCCACTGGAACAGCCTGTACAGGTTCAAACACCTGGCCACTGGGAACTACCTGGCCGCTGAGGAGAACCCAGGGTACAAGGGCGACAATGGAGAGAGCAGAAGTGTGTCTGACGGCAGCCGCAGTAAGAGGAACATGGGGGAGAAGGTGAAGTACAAGCTGGTGGCCGTGCCTCACGGGAACGACATCGCCTCACTGTTCGAGCTGGACCCCACCACCCTGCAGAAGACCGACTCCTTCGTGCCCAGgAATTCCTATGTCAGACTGAGACACCTGTGCACCAACACCTGGATCCAGAGCACCAACGTCCCCATCGATGTGGATGAGGAGAGGCCCATCAGACTCATGCTGGGAACCTGTCCCACAAAGGAGGACAAGGAGGCGTTCGCCATCGTCTCGGTGCCTGTGTCCGAGATCCGAGACCTGGACTTCGCCAACGACGCCAGTCTCATGCTGGCCACTGTGGTGGACAAGCTGAACGAGGGTTTCATCAGCCAGAACGACCGCAGGTTTGCCATCAAGCTGCTGGAGGACCTGGTGTTCTTTGTGGTGGACACACCTAACAACGGCCAGACCGTGCTGGACGTAGTGATGACCAAAGCCAACCGTGAGCGTCAGAAGCTCATGAGGGAACAGAACATCCTGAAACAGGTTTTTGGGATCCTGAAGGCCCCCTTCAAGGAGAAGCCCGGTGAGGGGCCTCTGCTGCGGCTGGAGGAGCTGTCGGACCAGAAGAACGCTCCGTACCAGTACATGTTCCGGCTCAGCTACCGCGTCCTGCGCCACTCTCAGGAGGAATACCGCAAGAACCAGGAGCACATCGCCAAGCAGTTCGGCGTGATGCAGTCGCAGATCGGATACGACATCCTGGCCGAGGACACCATCACCGCGCTGCTACACAACAACCGCAAGCTGCTGGAGAAGCACATCACCAAGACGGAGGTGGAGACCTTCGTGAGCCTGGTGCGCCGGAACCGCGAGCCCAGGCGCCGGGTGCCCAAGGAGATGCCTCACGCCCCAGAGTTCAGCTCCTCTTTGGAGGACTACGGGGACGAGGACGAGGTGTGGCTGGTCTGGACTGACAAGAACAACGAGAAGCAGGAGAAGAGCATTCGGCAGCTCGCCCAGGAGGCCAGGCAGGGCAACGCCCATGACGAGAATGTGCTCACCTACTACAGGTACCAGCTAAAGTTGTTTGCGCGGATGTGCCTGGACCGGCAATACCTGGCCATCGACGAGATCTCGAAGCAGCTGGACGTGGAGCTGATCTTCCTGTGCATGATGGACGAGATGCTGCCCTACGACCTGCGTGCCTCCTTCTGCCGCCTCATGCTGCACACACATGTGGACCGCGACCCGCAGGAACTTGTTACACCCGTCAAGTTCGCCCGCCTGTGGACCGAGATCCCACCTGCCATCACCATCAAAGACTACGACTCCAACATGGACGACTCCCGCGATAACAAGAAGAACAAGTTTGCCAACACCATGGCCTTCATGGAGGAGTACCTGAACAACGTGCTGCACGACGACCTGCCCTTCGCCCACGATGAGAAGAACAAGCTCACCTACGAGgtGGTAAGTCTGGCTCGCCACCTCATCTACTTTGGCTTCTACAGTTTCTTCGAGCTGCTGAGGTTGACCCGCACCCTGCTGGGCATCATTGATTGTGTGCCCAACCCCATGCTGATGCAAAACATGTTCCCTGATGATGTGGGCGGCAAGAACATGAAGCGATCCATTCACGGGATGGGTCACATGATGTCCACTATGGTGCTGAGCCGCAAGCAGTCCATCTTCGGCACGGGGGGGCGCTCCAGCGTCAGCGGGGACCCCCAGGCCCGCACCAAGGACCGCATCGACAAGCAGGACATCACTGTCATGGACACCAAGCTGAAGATCCTGGAGATTATGCAGTTCATCCTCAATGTGCGTCTGGACTATCGCATCTCCTTCCTGCTTTCTGTCTTCAAGAAGGAATTTATGGAGGTGTACCCTATGGGAGATGCAGACGCCACTGCCTCCATCGAGCACGCAGCCACCATAAACCTGCAGCGCATCGGGGAGCAGGCAGAGGCCATGTTCGGAGTGGGGAAGGGTAACAGTATTCTGGAGGTGGACGATGAGGGCGGACGCATGTTCCTGCGTGTGCTGATCCACCTCACCATGCATGACTACCCCCCCCTCATATCTGGGGCACTGCAGCTGCTCTTCAAACACTTCAGCCAGCGGCAGGAAGTCCTGCACACTTTCAAACAGGTGCAGCTGCTGATCTCAGAGCAGGACGTTGATAACTACAAGCTGATCAAGAGCAACCTCGACCGGCTGCGCACCATGGTGGAGAAATCGGAGCTGTGGGTGGAGAAGAAGAGCAGCTCGTCTGGTGGGGAGGGCAAGCAGGACAAGAAAGACAAGAAGGacaagaaggagaaaaaggagGTGGAGAAGGAGGTGGCCCCTGAAGAGCCCACACCAAAGGAGGAGAAATCAGAGAAGAGCAACGAGAACTACCAGATCGTCAAAGAGATCCTGGAGCGGCTCAACAAGATGTGCAGCACAGGGGTGTGGAAGAAGCAGCAGCGCCTCCTGAAGAACATGGGTGCCCACAACGTGATGCTGGACCTGCTGCAGGTGTCCTACGACAAGAATGACAAGAAGATGCAGGAGATCATTAAGTACACCCACCAGTTCCTTCAGAAGTTCTGCATGGGCAACACAGAGAACCAGACTCTTCTGCACAAGCACCTCAGCCTGTTCCTCAACCCTGGGCTCCTGGAGGCAGAGACGGTGCAGCACATTTTCTCCAACAACTACCAGCTGTGCACAGAGATCAGCGAGACGGTGCTGCAGCACTTCATCCACTGCCTGGCCACGCACGGCCGGCACGTGCAGTACCTCAACTTCCTGCACACCATCATCAAGGCCGAGGGCAAATACGTCAAGAAGTGCCAGGACATGATCATGACcgagCTGACCAACGCTGGTGAGGACGTGGTGGTCTTCTACAACGACAAGTCCTCCTTCAACACCATGCTGGAGCTGATGGCGCAGTCCAGGGAGGGAGTGCAGGAGCACAGCCCCCTGCGCTACCACATCTCCCTGGTGGAACTGCTGGCCGCCTGCGCCGAGGGCAAGAACGTCTACACCGAGATCAAGTGCACCTCGCTGCTGCCCCTGGAGGACGTGGTGCGTGTCGTCACCCATGAGGACTGCATCACCGAGGTCAAGATCGCCTATGTAAACTTCGTGAACCACTGCTACGTGGACACTGAAGTGGAGATGAAGGAGATCTACACCAGCAACCACATCTGGAAGCTGTTTGAGAACTTCACTGTGGACATGGCCAGGGTGTGTAACAGGCGAGAGAAGCGTTTGTCCGACCCGACTCTGGAGCGTTACGTGATCTCCGTGcagcagcaccgcAGCCTGGTGGAGACCTGCATCCGCACCCTCGCCGTGACCGCGAAGGGGCGCTCCATCTCGGTGCCGATGGACCTGGACTCTCAGCTCAGCACCATGCTGAGCACCAGCGCTCTGGGCTCCCTGCTGATCCAGCACACCAAGACCCTGATGACCTCAGAGGAGAAGCTGTGCATCAAGGTCCTGCGTACCCTACAGGAGATGCTCATCAGGAAGTACGATTTTGATGAAAAGAACTCCTTCTACAAGCTGATGATGGGAGACAACAAGTCAGAGAAGTTCTTCAAGGTTCTGCATGACCGCATGCGCGGCGCCCAGCAGGACATCAAGGCCACCGTGTCGGTCAACGTGGGTGAGATGAGCAACCGGGCCCAGGACAGCAAGGAGCTGGACCAGGGTGTGTCTCCCCAGTTTGCGGTGCCCTTGCCTGGCCAGCCCCCTCCCGGGCAACCCCCCCACGAGCAGCTAGAGCCCGAGGCTGAGATGGGTCCGGCCGTCATGATCATGAAGCCCATAATGCGCTTCCTGCAGTTGCTGTGTGAGAACCACAACCAGGACCTGCAGAACTTCCTGCGCTGCCAGAACAACAAGACCAACTACAACCTGGTGTGCGAGACACTGCAGTTCCTGGACATCATGTGCGGCAGCACCACGGGGGGGCTGGGGCTGCTGGGGTTGTACATCAACGAGGGCAACGTGGGGCTGATCACCCAGACCCTGGAGACGCTGACCGAGTACTGCCAGGGCCCCTGccaggagaaccagaCCTGCATCGTGACCCACGAATCCAATGGCATCGACATCATCACAGCGCTGATCCTCAACGACATCAGCCCCCTGTGCCGCTACCGCATGGAGATGGTGCTGCAGCTGAAGGACAATGCCTCCAAGCTGCTGCTGGCGTTGATGGAGAGCCGCCACGACAACGAGAACGCTGAGAGGATCTTGTTCAACCTGAGGCCCCAGGAGCTGATAGAGGTGATAAAGAAGGCGTACCACCAGGAGAAGGACTGTGAGGGGGGGGAGGTGTCTCCCCGTGAGGTCGGACACAACATCTACATCCTGGCACTGCAGATGCTGAAGTCTTCGGTTCCGGCGGAGACAGAGGCAGAGGACCCACTCGAGTACTACGAGAAACACACGGCCCAGATCGAGaTCGTGCGAGAGGACCGCAGCATGGAGCAGATCGTGTTCCCGGTGCACAGCATCTGCGAGTTCCTGACGGAGGAGTCGAAGCATCGCGTGTTCACCACCACGGAGCAGGATGAGCAGGGCAGCAAGGTCAGCGACTTCTTCGAGCAGTCCACCTTCCTGCACAACGAGATGGAGTGGCAGAAGAAGCTGCGCAGTATGCCGCTGCTGTACTGGTTCTCACGGCGGATGACTCTGTGGGGCAGCATCTCCTTCAACCTGGCCGTGTTCATCAACCTCATCATCGCCGTCTTCTACCCACACCACTCCGgcGCAGTGGAGTCCCCGGTGCTGCCCATTCTGTTCTGGGCGATGTTGGCACTGGCACTGGTGGGCATGTTCTCCCAGAGGAACGGGCTGCGGCCACTCTCCGTCGCGCTCATCCTGCGCTCCATCTACCACTTCGGCATCGGGCCCACGCTGCTTACTCTGGGCACGCTCAACCTGATCAATAAGATTGTGTTCCTGGTGAGCTTCGTGGGGAACCGCGGGACGTTTATCCGAGGCTACCGCGCCATGGTGATGGACGTGGAGTTCATGTACCACGTGGTGTACGTGCTGACCAGCACCCTGGGGCTGTGTGTCCACGAGCTCTTCTACAGCATCCTGCTGTTCGACCTGATCTACCGGGAGGAGACCCTGTTCAACGTGATCAAGAGCGTGACGCGCAACGGCCGCTCCATCCTGCTGACCGCGCTGCTCGCCCTCATCCTCGTCTACCTCTTCTCCATCGTGGGCTTCCTCTGCCTCAAGGACGACTTCATCATGGAGGTGGACCACCTGCCCCAGCCCAAGGAGCTGGAGCTGGGCGCTCACGGAGAGGCTGCACAGGACTTCCTGAATTCCTGCAGTGGAGACCAAGTGAGCTGCACTGCGGGGGCCAGCCTGCTCGCCGTGCCTGAGGAGGAGGACGATGGGACGGAGCGCGCCTGCGACACGCTGCTCATGTGCATCGTCACCGTGCTGAACCACGGGCTGCGGAACGGGGGGGGCGTGGGAGACGTGCTGCGCAAACCCTCCAAGGACgagTCCCTGTTCCCGGCGCGTGTGGTGTACGACCTGCTGTTCTACTTCATTGTGATCATCATTGTGCTCAACCTCATCTTCGGTGTGATCATTGACACCTTCGCAGATCTGCGTAGCGAGAAGCAGAAGAAAGAGGAGATCCTCAAGACCACCTGCTTCATCtgtgGGTTGGAGCGCGACAAGTTCGATAACAAGACAGTGTCCTTCGAGGAGCACATCAAGATGGAGCACAACATCTGGAACTACCTGTACTTCATCGTGCTGGCGATGTCTCTGGTGGTAACCGAGGGCGACGGCGAGCAGAACGAGATGAGGAACCTGCAGGACCGACTCAACTCCACCATGAAGCTGGTCACTCACCTCACCACACAGCTGACCGAGCTCAAAGAGCAGATGACAGAGCAGCggaagaggaggcagaggaTGGGCTTTGTGGACGTGCAGAGCAGTGCTGGCACTGTGCCCCCGGGCGCGGGGGTGGGCGGCAACCACCAGATCGTCAAGACGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60404 lncRNA downstream 427 49353692 ~ 49354535 (-) True G48363
TU60289 lncRNA downstream 304530 49027284 ~ 49050432 (-) True G48275
TU60148 lncRNA downstream 703733 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 808687 48545237 ~ 48546275 (-) True G48106
TU60047 lncRNA downstream 848826 48505871 ~ 48506136 (-) True G48092
TU60417 lncRNA upstream 67382 49453033 ~ 49453872 (-) True G48370
TU60464 lncRNA upstream 152077 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 155708 49541359 ~ 49545278 (-) True G48398
TU60502 lncRNA upstream 228045 49613696 ~ 49613974 (-) True G48430
TU60506 lncRNA upstream 232626 49618277 ~ 49618955 (-) True G48433
AMCG00013997 mRNA downstream 2264 49347284 ~ 49352698 (-) True AMCG00013997
AMCG00014002 mRNA downstream 24101 49327442 ~ 49330861 (-) True AMCG00014002
AMCG00013999 mRNA downstream 28820 49320171 ~ 49326142 (-) True AMCG00013999
AMCG00013998 mRNA downstream 37533 49312310 ~ 49317429 (-) True AMCG00013998
AMCG00014003 mRNA downstream 44837 49302622 ~ 49310125 (-) True AMCG00014003
AMCG00014007 mRNA upstream 70976 49456627 ~ 49463170 (-) True AMCG00014007
AMCG00014008 mRNA upstream 78788 49464439 ~ 49470132 (-) True AMCG00014008
AMCG00014006 mRNA upstream 96391 49482042 ~ 49486442 (-) True AMCG00014006
AMCG00014011 mRNA upstream 119815 49505466 ~ 49522620 (-) True AMCG00014011
AMCG00014012 mRNA upstream 172153 49557804 ~ 49558760 (-) True AMCG00014012
TU60179 other downstream 533806 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other downstream 533806 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other downstream 533806 48817983 ~ 48821156 (-) True AMCG00013991
TU59777 other downstream 1380047 47967425 ~ 47974915 (-) True G47896
TU59752 other downstream 1486099 47864850 ~ 47868863 (-) True AMCG00013946
TU60423 other upstream 98849 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 109076 49494727 ~ 49498630 (-) True G48392
TU60601 other upstream 334114 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 342853 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 359295 49744946 ~ 49747551 (-) True G48516

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069823 False 9167 mRNA 0.46 60 NC_007119.7 21254192 ~ 21353035 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_02094715_02126321.mRNA True 8670 mRNA 0.46 54 CI01000010 2093743 ~ 2126321 (-)