RNA id: TU58927


Basic Information

Item Value
RNA id TU58927
length 385
RNA type TUCP
GC content 0.57
exon number 3
gene id G47261
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45623238 ~ 45623895 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTAAGAACACAGACTGCCCCGCCAAGATGAGTGTGACTCTTCTGCGCACGCAGGTCAGCCGAGGCAGGCAGAGCAGGAGCACAGACCCTCATCTGCCGGCGTTCCCGACAATTGTGCAGATCAGCAGTAACCACAATCATGCCAGCGCTGTGGCAGACGCCCCGAGACGCACAGATGTGGGAGAACAAGAGGATGAGAAGCTTTTTGAACCTGGGAACTCGCCGCCATCTGCACCTGCTGAGGAGCCCATGGGAAGGAGATCATAAGCAACGTCCGCAAGATTCAGGCGGATGTGCCTGGACCTGGCCGACATGGTTGAGAGCAACGATGTGCTCGATGGTCCAGAGCTGGCCGCGATAAAGGCCTTCGAAAGGATCAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58925 lncRNA downstream 483 45622515 ~ 45622755 (-) True G47259
TU58873 lncRNA downstream 279223 45343301 ~ 45344015 (-) False AMCG00013846
TU58833 lncRNA downstream 354842 45268054 ~ 45268396 (-) True G47185
TU58826 lncRNA downstream 518351 45104223 ~ 45104887 (-) True G47180
TU58812 lncRNA downstream 656310 44966010 ~ 44966928 (-) True G47168
TU59047 lncRNA upstream 201828 45825723 ~ 45826654 (-) True G47358
TU59048 lncRNA upstream 204070 45827965 ~ 45828251 (-) True G47359
TU59058 lncRNA upstream 221954 45845849 ~ 45854800 (-) True G47365
TU59095 lncRNA upstream 297211 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA upstream 297211 45921106 ~ 45922870 (-) False G47391
AMCG00013859 mRNA downstream 1373 45616135 ~ 45621865 (-) True AMCG00013859
AMCG00013856 mRNA downstream 7983 45604826 ~ 45615255 (-) True AMCG00013856
AMCG00013843 mRNA downstream 249527 45359187 ~ 45373711 (-) True AMCG00013843
AMCG00013846 mRNA downstream 279638 45338859 ~ 45343600 (-) True AMCG00013846
AMCG00013845 mRNA downstream 294059 45316447 ~ 45329179 (-) True AMCG00013845
AMCG00013861 mRNA upstream 13033 45636928 ~ 45638791 (-) True AMCG00013861
AMCG00013857 mRNA upstream 15935 45639830 ~ 45647135 (-) True AMCG00013857
AMCG00013858 mRNA upstream 40985 45664880 ~ 45668281 (-) True AMCG00013858
AMCG00013860 mRNA upstream 51361 45675256 ~ 45682090 (-) True AMCG00013860
AMCG00013864 mRNA upstream 71740 45695635 ~ 45702773 (-) True AMCG00013864
TU58280 other downstream 2922170 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5014710 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 5035846 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 5194613 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 5348140 40273391 ~ 40275098 (-) True G46333
TU59115 other upstream 300027 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 339996 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 451534 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 536644 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 1247974 46871869 ~ 46875370 (-) True G47666

Expression Profile