RNA id: TU59047


Basic Information

Item Value
RNA id TU59047
length 932
lncRNA type intronic
GC content 0.33
exon number 1
gene id G47358
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45825723 ~ 45826654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNCATTGTTTTCTAGGGACGTGGCCTTTAATGCACTTGACAGTAGAgaagcacattattattatcttgtaTGTTCGGAATACAGTGAGAAAGGGATCATTCAGTGTGATTATCATGtggtgtgtttttacattttNNNNNNNNNNAAAGTTTACAtttgaaatctattttttcTACATGTGGAATTTGTCGTATTGTCTCACTGAAATCATCTGCACACTTTATTGTAAGTAGAAAATATTGTCCTTGTTTATGACTGTATTTTGTATCTGGTGTTGTCCCCTAGAGAGGGAATTTGGGCTTTttactagttttatttttccaatttgtgaaacatttgacaaataaaCAATGGAATGTAAAGTTTTCTGGTCTTCAGATTGTTATTTAATATGACATCAAGTACACAAACATGTTTCCCTGTTTATGAAACTTAAGCACCTAATAATCTATTATTTGTCAACTGCTTTGTGGTGAAGACGTATCATTAATCTTTAGTATGCGTTTGGCTAATTGGCTAACTgacacattttctaaaaatcatCACAATTATATGGCTACCCTTCAACGAAAGCAAGAAATGCCACGGCACTGAACTTGCCTATTTAAATACCCTACCAGATCATGTAGAATATATGTATTCTGATTCTTGGTTTCATTTCACCATGATTTTCAGGTGACAGACTTGTTTTGGCAGCCAGAATGAATTCCACATcagaaaaaacagaattacaaataatttggTACGCACTAGTTattcacaaaaaatattaataattattcataaaaaTCAGGAAATTCTTAATGACTAATTcccataaaatatgttttaaactccctatgaacaacaaaaaaagaaaaaatcctcAAATGGTCTCGacggtgtcgattagaggagtcgcttctaactggagtgaggttgttagtggagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58925 lncRNA downstream 202968 45622515 ~ 45622755 (-) True G47259
TU58873 lncRNA downstream 481708 45343301 ~ 45344015 (-) False AMCG00013846
TU58833 lncRNA downstream 557327 45268054 ~ 45268396 (-) True G47185
TU58826 lncRNA downstream 720836 45104223 ~ 45104887 (-) True G47180
TU58812 lncRNA downstream 858795 44966010 ~ 44966928 (-) True G47168
TU59048 lncRNA upstream 1311 45827965 ~ 45828251 (-) True G47359
TU59058 lncRNA upstream 19195 45845849 ~ 45854800 (-) True G47365
TU59095 lncRNA upstream 94452 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA upstream 94452 45921106 ~ 45922870 (-) False G47391
TU59313 lncRNA upstream 404671 46231325 ~ 46238514 (-) True G47538
AMCG00013874 mRNA downstream 9029 45807005 ~ 45816694 (-) True AMCG00013874
AMCG00013875 mRNA downstream 19390 45805431 ~ 45806333 (-) True AMCG00013875
AMCG00013865 mRNA downstream 40899 45783866 ~ 45784824 (-) True AMCG00013865
AMCG00013866 mRNA downstream 73135 45743779 ~ 45752588 (-) True AMCG00013866
AMCG00013867 mRNA downstream 113144 45712091 ~ 45712579 (-) True AMCG00013867
AMCG00013876 mRNA upstream 30812 45857466 ~ 45859867 (-) True AMCG00013876
AMCG00013882 mRNA upstream 92982 45919636 ~ 45928309 (-) True AMCG00013882
AMCG00013883 mRNA upstream 135536 45962190 ~ 45971610 (-) False AMCG00013883
AMCG00013887 mRNA upstream 152452 45979106 ~ 45991807 (-) True AMCG00013887
AMCG00013886 mRNA upstream 182450 46009104 ~ 46023024 (-) True AMCG00013886
TU58927 other downstream 201828 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3124655 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5217195 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 5238331 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 5397098 40386061 ~ 40428625 (-) True AMCG00013730
TU59115 other upstream 97268 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 137237 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 248775 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 333885 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 1045215 46871869 ~ 46875370 (-) True G47666

Expression Profile