RNA id: TU59095


Basic Information

Item Value
RNA id TU59095
length 1809
lncRNA type intronic
GC content 0.41
exon number 1
gene id G47391
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45921106 ~ 45922914 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTACATCTACATATTGAATATATTGACGGTCAACCCTTCTTTATCAGTACTTAGAACTACAAGGACAGTGTTGGACATGACTCTCGAGCAGCAGCCGGGTCACTTGGCCTTAAAGGGCTTGTCTCCCGTCTCTCGGATGTCAGCTTCCTATTGAAGACCTAAatacatctgtctgtctgtagatTTATGTTGCTCTCCGTGGTGTCTGGCGGGACAGGGCAGTTTTAATCTCACTGTCATCTAACTGTGGGGATGGCACTGCCTAATGAAGTTCACACCTGGCAGGATCTGTGACCCTGAATAGCTGATTAAGTTACTCCCTTCTCTTCTCCATCCAGAAATGTGCCGCCCTGCACGAGCACTTTGGTCCAGTCCAGCTTTTACTTTACGATTATAAAGGTTGTGTGGAAGTTCGAAACCACAGTCTTTGAAGTCGAAATTCacgatttttttgttttactaattcAAAGTTGTAGCAGAATGTTTGTCTACCAACCCAGGCACTGGTATGAAGCCGGTCCCTTGTTCAGGCAGGATGGTCCAATTTTATTCTAAGCACGTGCGCTATGTTCGTTTACTTGGGAAGGGGTCAGTTCGGTCCACAGTCGCTGAGTAGGACGATCAACGGGTGTTTATTTTCAGCTCTAACACATTTACAGCCtgtcaattaaatacaattgttaaatattttacgttttaataaaaactgtagcaaaATGATTTTACACTTACACTggcaaataaaaatgcactacATCCACAATTGCATCCGCACctatttaatgctttaaaatcctAATTCGACAGATTGCGCATTTCTGTCGGCTCCGTCACATCCataatgtttataataataataattatttataattacacaAATTACTCCTAGTTAGAGGGGATTACGGATAGATAAGTTGCATATTAAGAGTCCATGGCAGTAATttcagtaattgtatttttaagcgATACATGCAATGTTGGAGACATGGGCATGAATATTGCTTACCATGAGTTACTGTTTTAAAATCTTGTCGTGCAAGACACATTGTAACTATTGACTTATTCCAGGAAGTATTGAAAGTATGTAACCTGAATGAATGTGAGAAACTGGAAACTCCTTGAGCTCCATTGTTCAGATGTTACCTTTGAGGATTGTAAAACCGTAAGGCAGTACTGAggccaaaaaatacaaatttttaAGTCCcagatgtattaattaattaaagggcACCTTCCATGTGAAGTgtagtgttttaatgtgtttaaaatggcaGGAATTATTCTACTAATACTGCAATGAATGTCTGTTCTTACTGAATAATGCAATAACCTTGCAATGCCAGAAACAAACATGTGCAAAGCAGGAAGAGACTCCCGAGAGACGCTTCTGAAGGACAGAAGTTCCTAATGAAGGCCAAGGTGTCCGTCTGGATGCTGCCGAAGCCCCCGTGAGCAGCTGCCTCTTGTATCTCGTGTGTCACGGTACTTTTGGTGATATGGTGTTGAGCGCCATGGATTGTAGCCCAATGAAGGGATGTAAAAAGGCCACCGATTTCACACAGCCTGCGATCGAGGAACCGCCTGTACCTCGGGCTTCATGACAAGGTGTTCCCACTGCCTCCAGCACTGTTTTGATAACAGCAGGTGAAGTGTTTGTTCATTTCCATGGAGCTTGTTCACCGGCTTCTTAAACAAAACGCACATTGCAAAACAGAAGCActtgttattttgtatgtagttgtttttattattattgaaaggGGTCATGGAGGTATTTTGTAAATCTGTATCTCAATAAAatcttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59058 lncRNA downstream 66306 45845849 ~ 45854800 (-) True G47365
TU59048 lncRNA downstream 92855 45827965 ~ 45828251 (-) True G47359
TU59047 lncRNA downstream 94452 45825723 ~ 45826654 (-) True G47358
TU58925 lncRNA downstream 298351 45622515 ~ 45622755 (-) True G47259
TU58873 lncRNA downstream 577091 45343301 ~ 45344015 (-) False AMCG00013846
TU59313 lncRNA upstream 308411 46231325 ~ 46238514 (-) True G47538
TU59342 lncRNA upstream 376247 46299161 ~ 46302700 (-) True AMCG00013903
TU59468 lncRNA upstream 880697 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 1134625 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 1148429 47071343 ~ 47075028 (-) True G47717
AMCG00013876 mRNA downstream 61239 45857466 ~ 45859867 (-) True AMCG00013876
AMCG00013877 mRNA downstream 89665 45823117 ~ 45831441 (-) True AMCG00013877
AMCG00013874 mRNA downstream 104412 45807005 ~ 45816694 (-) True AMCG00013874
AMCG00013875 mRNA downstream 114773 45805431 ~ 45806333 (-) True AMCG00013875
AMCG00013865 mRNA downstream 136282 45783866 ~ 45784824 (-) True AMCG00013865
AMCG00013883 mRNA upstream 39276 45962190 ~ 45971610 (-) False AMCG00013883
AMCG00013887 mRNA upstream 56192 45979106 ~ 45991807 (-) True AMCG00013887
AMCG00013886 mRNA upstream 86190 46009104 ~ 46023024 (-) True AMCG00013886
AMCG00013889 mRNA upstream 105501 46028415 ~ 46038881 (-) True AMCG00013889
AMCG00013888 mRNA upstream 127679 46050593 ~ 46074428 (-) True AMCG00013888
TU58927 other downstream 297211 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3220038 42699506 ~ 42701068 (-) True G46742
TU57875 other downstream 5312578 40603601 ~ 40608528 (-) True G46423
TU57869 other downstream 5333714 40586816 ~ 40587392 (-) True G46418
TU57809 other downstream 5492481 40386061 ~ 40428625 (-) True AMCG00013730
TU59115 other upstream 1008 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 40977 45963891 ~ 45974311 (-) True AMCG00013883
TU59204 other upstream 152515 46075429 ~ 46083542 (-) True AMCG00013890
TU59251 other upstream 237625 46160539 ~ 46163487 (-) True G47501
TU59474 other upstream 948955 46871869 ~ 46875370 (-) True G47666

Expression Profile