RNA id: TU59251


Basic Information

Item Value
RNA id TU59251
length 2632
RNA type TUCP
GC content 0.51
exon number 3
gene id G47501
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46160539 ~ 46163487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTTGGTTTCTCGACGGGGGTTTATTTGTACACAAGGCAGACTAGTACAGGCGCTGGGGCTTGCCCATGGTGCTCTTGATGTACAGGGCGCGCACGTTCTGCCAGTTCTTCTTCAGCAACGACACCAGGAAGTTGATGGCCAGGTGGATGTTGTACACCAGCTCCTCCTCGGTCATCTTCACGTGTCCGACGGCCACGGCGAGACACAGCACctgggggaggagagggggattACAGCCACTGTCACGCTCCAAGAGGCCCATATTACACACGCGATCCATCAGAGTACAGCAGGTAACACTCGTTTACTCTGGTCTGAAGGAGAGGAGTTTACCTTCTTCATCTGGAACTTGATGGTGGACTTGACCTCGTCCACCTTGGTGTTCAGGTTCTCGTTGTGGGTGAGCAGCGAGGGGAACTTGCCAGCCTTGTTCAGCCCGGGTCCGAGGATACGGGGGATCTGCTTGATCAGGGACTCAGAGGCCAGGAAAGCATCGTATCACCagcttcttgttcttgttcagCTTCTTCAGGGCCTCGATGTCCATGTGGGGCAGTCCTGCCGCCTTGGCCTCGTCACAATGCTGCTGGTCTCCCAGGACGCACACGGAGAACTTGGGTCGGGGGGTGGTCTTCAGCCTGGGGAGCACAGGAGATGCCCTCACGGCTGGCTTCTCGTCTCTGTCATCCACCAGCAACAccattttgttaataaaatggcCGGCGGGGATTGGCCGAAAGCCACCCCCACGCCTCCCCTCATGTTTTAAGACCCAGGGTAGGGGTCCGCCCGCTTTCCCACCCACCCACGGCAGGGGCAGGGGGTCAGTCGGACTACCCAAAGCTTTTCGGCGTCGCCCGCTCCAGTGCCGCCCCGGCCCCAGTGGGGCTGCGTCTAGAGGTCGGGCCAACGCGGCGCAGCTCTGAGGGGCAGCCGGGGAACGGGCGGGCAGAAGGCCGGGTGGAACAGTAAAGGGCCGAACCTGACGGTGCCAGAGAAACGCTTGTCCTTCTGAGGGTCGTAGTTCTTCAGGCTGATCTGCAGCTCCACGGTCTCCACAAACCTTTGGGGGAACAGGAGAGGAATGAGTTAGCGCCAAGTTTAAACCGTGCGCAGACACGGAGCCTAATGTCCGACATCCTACAGAGGaggatttaaatgcatcagaccGTATACAAAAGTGTAAAAGGGTCGCAAATACAAATCCCGAGCTCCTTGGCAGCAGAGGagatgcatgcatgcatgcaggCTGAATGCACAAACCCAAGACCACTCTCCCCCACAATACGTTTCAGTCGTAGCCTCAGTCTCCCCCACTTCATCTCCGTTTCTCtcgctacacacacacaaaaatggctCTTACTTGCGCTGCTTCTGCTGGGACCCCAGCTGGAGTTCACGCACCCCTTCATACAGGGTCTCTCTGGACACCTTGCTGCGAAACAAGAACAAGACAGCCGTCAAGaccacacacaacactgatGTCACTGGTATTTACTGCAGAGctcttttttaacatttaacaattgTAACATGTTGAAATCCAGCAGAAATAGATTCCCAATCCCATGTGACAAGTAGTGCAAGAACTGTGCAATTGGACACAGCCAGGCAGGTTTACACCGGCACCGTCTTCAGGCAAACACAGCTCCTGCAGTAGTTTTGTCTGCTGGTTGTATTTCAAGCTCACTAAATTCCTCGAACAAATCGAAATTAGACCAAAAAAGTGCTTAAATGGTTGGATAATACACTGTACCAAAGTTAATTACACCTGAGGGTGGACACAAGATAAATGAAGGTTAAAATGATCGTCTCATCAGGGTCTGTCCTGGGCGCGGGTGTCAGTGTGGACGGTGTCGATTCAGTGAGACATTGTGGAGTAAAGGTCCAGCAAGAGAGCACTTCACTGACACATTGGGACTCTTCACAGTTAGACTGAACCAGCTGTGAAGCGTGTGGATTATAAAGATACGTTTTAAAATGGCAACAGCAGTGCAGAAGTCATTAAAGGCCAAAGCGGGAGCTGCGGTCAATCTAACACACGTGAAAAGCTTAAGTGcacaaaacatgcttttaaaactGATACGCATTTTATTTTAGGATCATAACTTGTAACACGTTGTTTTCCATCTGCAGTGAAAGCACTTCAGCACCAGGAATAACGCACCGGCTATGGCACCAACATCTACAATAATCACTATCATAATAATTCACAAACCACTTTTACAGCACAATGCGAGTATCTGAGGGATGTTTGTACAGATTGACCGGGTTTATGGGGTCGGATGACAACGGATTAGATCGTGAGAGCGACCTGTGCTTGTCAGGCCATTGCTACACCGGCAGCGCttttaactgtaaaacataattCAGCTGCTCTTCTTGACGGGACAATAATGTTACTGGACAAGATTTATACCCAACAATGCTGTTATGAACATCCTTAAAGCTCCCAAACGCCactaaaacaagtttaaaactCATTTTCTCTCACCTCATCTTGACTTCACGTTTCTCTGAACACGGAGACGGAAAAGAAAGGGCTCAGCGGAACTTCCTGTTTAAGTACGACCAGGCACCGCGCCACCACTGTGGCGGGTTTTGGCGGCCATCTTGGTAGTGGCTAACAT

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59095 lncRNA downstream 237625 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 237669 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 305739 45845849 ~ 45854800 (-) True G47365
TU59048 lncRNA downstream 332288 45827965 ~ 45828251 (-) True G47359
TU59047 lncRNA downstream 333885 45825723 ~ 45826654 (-) True G47358
TU59313 lncRNA upstream 67838 46231325 ~ 46238514 (-) True G47538
TU59342 lncRNA upstream 135674 46299161 ~ 46302700 (-) True AMCG00013903
TU59468 lncRNA upstream 640124 46803611 ~ 46838764 (-) True G47661
TU59536 lncRNA upstream 894052 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 907856 47071343 ~ 47075028 (-) True G47717
AMCG00013898 mRNA downstream 57923 46094540 ~ 46102616 (-) True AMCG00013898
AMCG00013891 mRNA downstream 72761 46087083 ~ 46087778 (-) True AMCG00013891
AMCG00013890 mRNA downstream 77225 46075764 ~ 46083314 (-) False AMCG00013890
AMCG00013888 mRNA downstream 86111 46050593 ~ 46074428 (-) True AMCG00013888
AMCG00013889 mRNA downstream 121658 46028415 ~ 46038881 (-) True AMCG00013889
AMCG00013903 mRNA upstream 139039 46302526 ~ 46311118 (-) False AMCG00013903
AMCG00013905 mRNA upstream 221195 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013908 mRNA upstream 224667 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013907 mRNA upstream 241337 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013906 mRNA upstream 288577 46452064 ~ 46465408 (-) True AMCG00013906
TU59204 other downstream 76997 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 186228 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 236191 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 536644 45623238 ~ 45623895 (-) True G47261
TU58280 other downstream 3459471 42699506 ~ 42701068 (-) True G46742
TU59474 other upstream 708382 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 1034856 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1701363 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1803938 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 2654496 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile