RNA id: TU59468


Basic Information

Item Value
RNA id TU59468
length 1798
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G47661
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46803611 ~ 46838764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccactcccccaaaCAGATTCACAGAAAAAGCATGAGCCACCGGAGACAGTGTAATaagtattttattgcattttataatgcCATTGTCAATAATTAGTACAGATTACATGCAACTAGAACtactgtacagttttttttattgtctgcATGAACAGACACAAGGAGATTCAGGTTacaaatacacagatatatgtgtgtgtttcttttatacagcatgaagaaaaaaatggcaGTGAcctgcatacaaaaaaaaaaaagaagggtACCCAGGAGACTATCAATGTGGCGGGTGGTTACAGTTTTCTGCCACCTCGAAGCACCCACTTTTTCCTCCCCTGGGTGGCATGTAAAAAGAAAGGAACccaaataaaaagagaaaaacagttaTAGAGAGTCACTGCAGAAAATGTTCACACATTCGTAAGATACAATGCGAGAAGGAAGTGGTAGTTCCGATCGGTTGGTCTAAAAGCTGACACCATTGGGCAGAGCCACCACGTGCGGTCTTCTGCCCGAGCGAAAGTCACGAGAAGGCCGTTGTACACAGCAGAATGGATTTCCAAACATGTTACAGGGTCTCACCAGCGAGCGGAAAGTGTTTGTGTTAATGTCGTCTAAGGACACAgtcaagaacaaacaaacaaaaaaaaggaatctCTTTAGATTTAGTAACACTAAGAAGGGCACCTTGTAAATCAGTCCTTGAAATGAAATCCACTTCATAAATGTACAAACCCCTCTTCCAACTCTACTAGACATcattaaacacttttaaaccaATAacaatattagaaaataaaaaaacaatgataataaatgtATCAGGAAAGCGCATTTCTTTCACACTCATTTACTTCGGTTAAAGCCAACTAATCTGTTTTGTTGATGGTGATGTACCGCGGGGTACGAGATGGTGAGACGTGGCGCCCAGGAGAAGATGCCTACAAAACAGCTAGATACAACCCCTTTGGCAGCTGATTTGTGAAAGCCTTGATGCTTCGTTTGGTATGGTGCTGTCGAAAGTGAACAGTTATttactgcaaataaacaaaaataagtgaGAGAATGAATGCCTTTGTCATTTTCCATCTGCCTCCACGATGGAGTTGAGTACGTTTGACCATTTCCCGTCACCCTTCCAGTCTTTGGAAAGTCCAAGTCATGGCTTGTAGAACAAAAGGCAGAAAACGTGTCCAACTGCAGAAAGCTTTTTGATACCCCATAACTCTGCTTTTGGTAACTTGACATGGCAACTTATTTTACGAACACAGCAcggagagaggaggggaaagaCCTGTTAAAAGTCCCTGGCCTTGGCCCGTATCTTTCGTCCATCCACTGCTGTGGGCGAGTTCGGTCACAcaccatcctgaccagcctcgCATCGTCCAATTTCAATATTGCTCCACTGGTTTACAGAGACGGGGGACGGGGTGTTTCTTTCAACGCGTCGCCAGAGGTAGATGGAAGTAAGACACGGTTGAGGGGAAACTGGGAGCTCCATCTTCAGCACTGAGGCCAAAGCTTGGTTACTGTCTGTCAGACGAATTGTTAAATGACGTATGAATGGGTCTCAGGCTCAGACACTTGGCTACAGCCGAAACTACCACTGGCTAGTGAGATATGGTCTGGAAGATAATGGTAGATACAGGAATGACGCGGGTTAAAGGGAGTTTGAACACATATTGGCACCTAAAAGGACCAACAAAATACCTTACAATCGCTCGCTCTTAAAAGCAAGAGAGGGCtacacattttcttcactttttttttttttttttttaattttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59342 lncRNA downstream 500911 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 565097 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 880697 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 880741 45921106 ~ 45922870 (-) False G47391
TU59058 lncRNA downstream 948811 45845849 ~ 45854800 (-) True G47365
TU59536 lncRNA upstream 218775 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 232579 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 387037 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 656647 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 701799 47540563 ~ 47545591 (-) True G47809
AMCG00013910 mRNA downstream 295894 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013906 mRNA downstream 338203 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013907 mRNA downstream 396680 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013908 mRNA downstream 413993 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013905 mRNA downstream 417370 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013914 mRNA upstream 91811 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013916 mRNA upstream 131495 46970259 ~ 46976190 (-) True AMCG00013916
AMCG00013915 mRNA upstream 137927 46976691 ~ 46985670 (-) True AMCG00013915
AMCG00013920 mRNA upstream 156378 46995142 ~ 47000214 (-) True AMCG00013920
AMCG00013921 mRNA upstream 176292 47015056 ~ 47017727 (-) True AMCG00013921
TU59251 other downstream 640124 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 720069 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 829300 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 879263 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 1179716 45623238 ~ 45623895 (-) True G47261
TU59474 other upstream 33105 46871869 ~ 46875370 (-) True G47666
TU59572 other upstream 359579 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 1026086 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1128661 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1979219 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008792 True 2786 lncRNA 0.37 2 NC_007122.7 22089435 ~ 22094397 (-)