RNA id: TU59474


Basic Information

Item Value
RNA id TU59474
length 3502
RNA type TUCP
GC content 0.38
exon number 1
gene id G47666
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46871869 ~ 46875370 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCTTCTCACCAGCTGAAGCAGGCGCTCATAAGCGAGGAACGCACTCCATAAGATATTAATGCTGTTTATAATACTTGTCTAAAAATATGTTCACACCCATAATGATGCTGTAATAAAGGGCAATTGAAAAGGCAATTAGAACAGCTCAACAAAGAAACACACCGACAcatcaaaactgaaattaatttccaTGTTTAGCCAATGACAGAGAGCCACACTGTTTATAAATCAAATCATGCTGccacattaaataacaatgcatttttaatattgagTCGTCTGTCACAGTCCTCAGTGTTGAGAAACAGCAGGtgatatacagaatataaaatgttaagtCATTTGTACCTTAAATTTACATCCTAGCAGAGCAACATATTAAACCTAAATCTATAGAACATAAATCTACAGAATACGCCCTGGAAAGATTCAGcttaacaacaacacaaatcccattaacacattaaataacTGCATTGAATTGCACATCAAgggtcacaaaaacaaaaacgaaactCCAGTCACGCTGCTAATTCATCACTGACTTAAGACTCCCaaagggtttatttttattgtattatttccagACTACAGTCAATGATTATGGTGGTCTGTAATCACAtgagcttgtgtgtgtttgtttttgcactgaCACAACTGTGCCAATCACTTTTCTAAATTACAATACGTTTTAAAAATGAAGCGACAAAGACAAGGTACACAGTTTGGTATCGTTTTCAGTCACACTGCCATCGCatttccatacacacacacacaaacacacacacaataccaaGTAAGATATGAAGCTGATCCAGCATTGCCATTTTTGCCCGATCCTGTATTGCACACATCGTTTAAAAACCTCAGCAGTGAGGTCACCTCGAGAGTTGCGCCAACCTTGTAAGATCGGTCTTCGTGATTCAAAAGGACAACTCATATCCCCTGTGGTTGCCTGTTACTTCATTCCCTTCTTCTTTCACATGGTGCTGTGTGCACTTTCGGTTATTCTCTCATTTCCTAGTGAATCAGCTACACCGTGTGCCAACCAAGGGCAGGTCAGACTGCTCTCGAACTCGCTCAGAAATTGCAGTCTTTCCAGCCAAAATGTCCTAAGCCATTACTGCTCTATAGCAATGGATGCCTACCAGTACTGCAGAGGTCCTCTGGGCTTCAGCAAGCTGCACAACCCTAATTTGTTTCCCCCAAAGTACTACCTTTGGTCAATTCAAGCTTAGTATGATTAAGGTTAAGGCGGCTTGTTGTGATAAAGAACTACGACAAAGACCCTTACAGAACACACAGCAAGCAACGAGACAGCTGGACCAGACAGAAGAGAATTCGTGATCCCTCTATCACACATATGGTCATGCTgaaatactgttaaaaaaagCACCCACATTGCATTGCCATAAGAATTTAAACAAAGGGTCCCCAAACATcaacatttcatacatttaaatctacCACTGTAACCAGgagattaattttaaaccaaattATAAAACAGTTGTCCATCTTTCTCCCTGGTCCCATCGTGTACAGCTTTtatagagttaaaaaaaaacgataTTCAGATGGTTAAAAGATTGAGTCATTTCCTTTCACAAGGCAAAAATGTGACTTCAATGTGACTATCTGGATTTGTTCCTTAAATGCCTTGAATTCATTATGCAACAGCATGCCTGCGAGTGAATCGAAAGCCTGGAGTATTTACTGGGacgtgtatgtatatgtgtttgtttgaaatgctaATGCCAACAGTGGCAATCCCTGAAGTAATTTCTTAATAATCCACACCTTCGAAAATGGGCTATTACTGCATGCAAAAATGGTTAATGGAGAGTGTGTGCTGGCATTTTCATTTAGCAAGCATGACAAAATTCTTCCTTGCTCCCACCTAGCAGAGTCTAAATATTGTTGATACCACTCGTTAGTGGCCAGGGTATTTATTTACAGGTCTTTGCACGCCACTGGCTTTAACCTCGGCATTAACACATCactaatttgtgatttgtgaaatgtaatttaacagtAGTTCTTTAGAACTAGATATTTTCAAAACACTTCCAAAATTGTGCCAGGAACTCACTTTTTCCAATGAAATACTCTTATCCtaactaaaaaatatttatcttgAAACAggacattatttgtttattctaatattgtttttttactacGATTTTAGAATGTAAAATGTTGAGCTGTAGCATTTCTGTAGTTCAATTACAAATAACAGTGAAACCCAGCAATCCCAGAAAAATGTCACATCCATTCCTCACTCGTTGGCTCAGAGTGCACTGCCCTGTTGTATAACGAAGTGAAGGCAGGTTACGACACAGTAATCATTTAGTAACAGTGTGTCAGAGCAGAAACCATGCTTTTCAAAGTAAAATCCCAGTTCAACATTTGCTGCCCATTTTCTGAATGTAACTGTACATGCAAAAAGGTTTAATACCATCCCAGGTATGGAAGAGCGTGTAtcacataaaaaacatttacttcagTTAAACAGTTTTGCACAATTAGCTGGAATTTATTTGGAGTCGGACAAAACTGGAGCAAATGTTGCCCTGGAGCGAAATGCTTTGAAAGTAGTCCTATTAATGTTTATGCAGTGTTTATTTCTCTCCAGcaaatttaataatttcccTCCCCAGTTCAAAACGTATTTGCGCTCACCATCGAAGGCATTTTACACTCTCAGTCCATTATtcttttgttcatttggctACTTTGTTCATTTTGCTATTGTTCCAAGAGACGTCCTACCCCTCTGCTGTACAGCTcaaaaacattgtgtacatTGTCTCGCTTGTACTCATTTCCAGGGCTCCTAAAACCATGATCCATCTTAAGCCCCCAAACAGCAAGAGTGCACAGCTCTGAAGCCTGCAGCACTGCATTAAAAGTTCACTCTCAGACTCGAAtaagacacttaaaaaaaaaaaaaaaaaaaggtctcccAAAAtgtacttctgtttttttttttgcaggagtaaaaatgtgtaaatctaGCGAGgaacacatttaatgtaaaaactggaagaaaaagGTAATATACACCACAAGTTTATTCTTGTCAGGAGGATATTCCTATAACTAAAAATGCGTCAATCTAACAAGAACGCTAAAAGCTTTGATACACTAATTGATTGTACTTTGGCGGAATTAAAACCGTACTTATCTGGCATCAGTGACCACAGTACAGTGAGTAATTAGTAAATCATCCTGCTAACTCTGAGACTTCGAGTACACGTGCACCAACAgcatatgcacacacaaaatatatatgttatctGGGACGATCTAAAAGTAATGAGAAAAAACTGCTTACTAAGTCCTTAAGGGTATTTTACTCACAGTTTGCAATAACGAGCTTTTTTAGGATCCTACCTAGCATCTAGCATCCTATTTAGCATCCTATCTAGCTAGACTCCCAAAACCAAAAATACTCCAGCCATCATTTAATTCTAATGTTTGATTTAAGTTGTGTG

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59468 lncRNA downstream 33105 46803611 ~ 46838764 (-) True G47661
TU59342 lncRNA downstream 569169 46299161 ~ 46302700 (-) True AMCG00013903
TU59313 lncRNA downstream 633355 46231325 ~ 46238514 (-) True G47538
TU59095 lncRNA downstream 948955 45921106 ~ 45922914 (-) True G47391
TU59096 lncRNA downstream 948999 45921106 ~ 45922870 (-) False G47391
TU59536 lncRNA upstream 182169 47057539 ~ 47120601 (-) True G47718
TU59534 lncRNA upstream 195973 47071343 ~ 47075028 (-) True G47717
TU59609 lncRNA upstream 350431 47225801 ~ 47227254 (-) True G47766
TU59662 lncRNA upstream 620041 47495411 ~ 47495684 (-) True G47807
TU59664 lncRNA upstream 665193 47540563 ~ 47545591 (-) True G47809
AMCG00013910 mRNA downstream 364152 46470371 ~ 46507717 (-) True AMCG00013910
AMCG00013906 mRNA downstream 406461 46452064 ~ 46465408 (-) True AMCG00013906
AMCG00013907 mRNA downstream 464938 46404824 ~ 46406931 (-) True AMCG00013907
AMCG00013908 mRNA downstream 482251 46388154 ~ 46389618 (-) True AMCG00013908
AMCG00013905 mRNA downstream 485628 46384682 ~ 46386241 (-) True AMCG00013905
AMCG00013914 mRNA upstream 55205 46930575 ~ 46946388 (-) True AMCG00013914
AMCG00013916 mRNA upstream 94889 46970259 ~ 46976190 (-) True AMCG00013916
AMCG00013915 mRNA upstream 101321 46976691 ~ 46985670 (-) True AMCG00013915
AMCG00013920 mRNA upstream 119772 46995142 ~ 47000214 (-) True AMCG00013920
AMCG00013921 mRNA upstream 139686 47015056 ~ 47017727 (-) True AMCG00013921
TU59251 other downstream 708382 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 788327 46075429 ~ 46083542 (-) True AMCG00013890
TU59142 other downstream 897558 45963891 ~ 45974311 (-) True AMCG00013883
TU59115 other downstream 947521 45923922 ~ 45924348 (-) False AMCG00013882
TU58927 other downstream 1247974 45623238 ~ 45623895 (-) True G47261
TU59572 other upstream 322973 47198343 ~ 47200897 (-) False AMCG00013932
TU59752 other upstream 989480 47864850 ~ 47868863 (-) True AMCG00013946
TU59777 other upstream 1092055 47967425 ~ 47974915 (-) True G47896
TU60179 other upstream 1942613 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 1942613 48817983 ~ 48821156 (-) False AMCG00013991

Expression Profile