RNA id: TU59777


Basic Information

Item Value
RNA id TU59777
length 1211
RNA type TUCP
GC content 0.43
exon number 2
gene id G47896
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47967425 ~ 47974915 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGAGGGCACCACGCCCTCTCTTTTCCCGCGGATTGCTGCAGAGTCGTGGGGAAGACGAAGACATCCCGGCCCAAGCTCAGCTGTGGTGGCGAAAGGGTGTGTCTTGGTTCGTAAAGCACGGATGCACTTGGCCGGTAAAGGTGAAGGTTAGCGATGAGAACCAGTTCTTACCTGTGGGAACCGGGCTGAGTGTCAGGGAGAGGCCTGCCTGGTCCAGACAGCACTGAGGGAGTCGTGACAAAGGAAGTACAGGGAATCTGCTGACCTGTAAGTTCAGTTTCTCCTGGTGTGATTTGTGTTTGATTGTTGTAGGTGTTTTTCTGTATATAGTGATATACTGTAAACAGCATACTTTCCTCTCAGTGAATGCTTTTGAAGGGTTTTTCAGTTGACAAGCTGCTCCTCCCAGAAACAACTGCAATCGTGGTATCGGGTCTCTCTCCTGACTCTTCACAATGAACTCCCTGAGTCAGGCTGAACCGTGTGAAACTGTTCAGAAAACAATCACTCTTTCTCACCTTCGAGTCAAAGGGATGACTGAAGCACTTTAACTAAAACCAGGCCAAAGGAAAACGGAAAGGAATAATTCCACAACCTCCCTGGAGGCAAATGCGattattatttctctctgtTTAAAAGGAGCACGCTGTCTGTGCCGGCAGGGGATTCTATTGGTCTGACTGCGTCCTATTTCTTCAGGGTTTTCTACACGTGACTACACTTTTGAAGTGATGTGTGTTAGCATGTTCTGTTCTCTTGTTTccgatttgattttttttctaaatacacCTGAAGttgctctgtgtgttttaatgaattgTCCTGCAGGTGGACTGCGGCCTGGACTCATTGATGCAGGTGTTAAAACATTAAGTGATTCAGCTGAACTGCCAACCCAACCTATTCTTTTATCTGAGCGAAtggtcttttttctttattttatgcttTATGGTATATTCCAActtatattgtgtgtatttattatttgtaatgcattataTGAACTGTGTGTAATAGTAGCCTGCTAATGATTGGAAAATCCTGTAAATGACTTAATAATACAGTTATTATAACAACATAAAATGACTGTTGAAGAATAATGATTGTGTTTGAGGAGGGTGAACTCCATCTTGTGTAAGGACGGACGGGTTCGggtttgggtttgttttgttgtaaaacTGTACAATAAATTCACACCACAGCGTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59711 lncRNA downstream 272531 47689845 ~ 47694894 (-) True G47839
TU59664 lncRNA downstream 421834 47540563 ~ 47545591 (-) True G47809
TU59662 lncRNA downstream 471741 47495411 ~ 47495684 (-) True G47807
TU59609 lncRNA downstream 740171 47225801 ~ 47227254 (-) True G47766
TU59534 lncRNA downstream 892397 47071343 ~ 47075028 (-) True G47717
TU59811 lncRNA upstream 41646 48016561 ~ 48016838 (-) True G47917
TU59896 lncRNA upstream 204352 48179267 ~ 48179685 (-) True G47991
TU59908 lncRNA upstream 240960 48215875 ~ 48216209 (-) True G47995
TU59936 lncRNA upstream 294429 48269344 ~ 48270564 (-) True G48021
TU59940 lncRNA upstream 301821 48276736 ~ 48277321 (-) True G48025
AMCG00013945 mRNA downstream 60259 47869425 ~ 47907166 (-) True AMCG00013945
AMCG00013946 mRNA downstream 99191 47865992 ~ 47868234 (-) False AMCG00013946
AMCG00013944 mRNA downstream 110263 47849279 ~ 47857162 (-) True AMCG00013944
AMCG00013942 mRNA downstream 251430 47709213 ~ 47715995 (-) True AMCG00013942
AMCG00013940 mRNA downstream 343467 47583585 ~ 47623958 (-) True AMCG00013940
AMCG00013947 mRNA upstream 4674 47979589 ~ 48001071 (-) True AMCG00013947
AMCG00013949 mRNA upstream 30784 48005699 ~ 48014251 (-) True AMCG00013949
AMCG00013950 mRNA upstream 47149 48022064 ~ 48024332 (-) True AMCG00013950
AMCG00013948 mRNA upstream 56477 48031392 ~ 48048066 (-) True AMCG00013948
AMCG00013955 mRNA upstream 185759 48160674 ~ 48165662 (-) True AMCG00013955
TU59752 other downstream 98562 47864850 ~ 47868863 (-) True AMCG00013946
TU59572 other downstream 766528 47198343 ~ 47200897 (-) False AMCG00013932
TU59474 other downstream 1092055 46871869 ~ 46875370 (-) True G47666
TU59251 other downstream 1803938 46160539 ~ 46163487 (-) True G47501
TU59204 other downstream 1883883 46075429 ~ 46083542 (-) True AMCG00013890
TU60179 other upstream 843068 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other upstream 843068 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other upstream 843068 48817983 ~ 48821156 (-) True AMCG00013991
TU60423 other upstream 1509585 49484500 ~ 49484767 (-) True G48373
TU60452 other upstream 1519812 49494727 ~ 49498630 (-) True G48392

Expression Profile