RNA id: TU60452


Basic Information

Item Value
RNA id TU60452
length 543
RNA type TUCP
GC content 0.60
exon number 3
gene id G48392
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49494727 ~ 49498630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacacacacacacagctccccACATGGGCAAGTACAGTCGGCGTGCTGCTGCGGAGGGAAACacaaggagagggagagagagaaagagagtcaCACACTCCAGCTCCTCTGCTCGGTCGTCCCCAGTCTCCTGCATGCACACTGCACCGCCAGCCTCCTCACAGACCCCCGCAGGACTGCTGCACTCCGCCAACAGCATGGAGAAAGTTGGTGGGCCGGAGCTACAGTGTAAGATCCCCCTGCCAGGGGCGCTGCTGACACAGTCGGGCCCAGTTCTACAGGAGAGAGGGCAGTGGGGCAGTAAGTTAGAGTTCCTGCTGGCCGTGGCCGGGCAGATCGTCGGCTTGGGCAACGTCTGGAGGTTCCCCTACTTGTGCTACAAGAACGGAGGAGGCGTGTTCTTCATTCCCTACATCGTGTTCCTAATAACCTGTGGTATCCCCCTCTTCCTGCTGGAGACGTCCATCGGCCAGTACACCAGCCAGGGCAGCATCACCTGCTGGAGGAAGATCTGCCCGCTGTTTGAAGGtgagcctgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60417 lncRNA downstream 40855 49453033 ~ 49453872 (-) True G48370
TU60404 lncRNA downstream 140192 49353692 ~ 49354535 (-) True G48363
TU60289 lncRNA downstream 444295 49027284 ~ 49050432 (-) True G48275
TU60148 lncRNA downstream 843498 48645190 ~ 48651229 (-) True G48175
TU60061 lncRNA downstream 948452 48545237 ~ 48546275 (-) True G48106
TU60464 lncRNA upstream 39098 49537728 ~ 49595073 (-) False G48398
TU60462 lncRNA upstream 42729 49541359 ~ 49545278 (-) True G48398
TU60502 lncRNA upstream 115066 49613696 ~ 49613974 (-) True G48430
TU60506 lncRNA upstream 119647 49618277 ~ 49618955 (-) True G48433
TU60512 lncRNA upstream 123467 49622097 ~ 49623191 (-) True G48437
AMCG00014006 mRNA downstream 8285 49482042 ~ 49486442 (-) True AMCG00014006
AMCG00014008 mRNA downstream 24595 49464439 ~ 49470132 (-) True AMCG00014008
AMCG00014007 mRNA downstream 31557 49456627 ~ 49463170 (-) True AMCG00014007
AMCG00014001 mRNA downstream 109076 49354962 ~ 49385651 (-) True AMCG00014001
AMCG00013997 mRNA downstream 142029 49347284 ~ 49352698 (-) True AMCG00013997
AMCG00014011 mRNA upstream 6836 49505466 ~ 49522620 (-) True AMCG00014011
AMCG00014012 mRNA upstream 59174 49557804 ~ 49558760 (-) True AMCG00014012
AMCG00014023 mRNA upstream 97153 49595783 ~ 49607194 (-) True AMCG00014023
AMCG00014024 mRNA upstream 179690 49678320 ~ 49680362 (-) True AMCG00014024
AMCG00014034 mRNA upstream 191049 49689679 ~ 49694164 (-) True AMCG00014034
TU60423 other downstream 9960 49484500 ~ 49484767 (-) True G48373
TU60179 other downstream 673571 48817983 ~ 48821156 (-) False AMCG00013991
TU60180 other downstream 673571 48817983 ~ 48821156 (-) False AMCG00013991
TU60181 other downstream 673571 48817983 ~ 48821156 (-) True AMCG00013991
TU59777 other downstream 1519812 47967425 ~ 47974915 (-) True G47896
TU60601 other upstream 221135 49719765 ~ 49721526 (-) True G48506
TU60605 other upstream 229874 49728504 ~ 49729055 (-) True G48510
TU60614 other upstream 246316 49744946 ~ 49747551 (-) True G48516
TU60684 other upstream 365694 49864324 ~ 49930152 (-) False AMCG00014043
TU60685 other upstream 372363 49870993 ~ 49873375 (-) False G48570

Expression Profile