RNA id: AMCG00014162


Basic Information

Item Value
RNA id AMCG00014162
length 408
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00014162
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3044338 ~ 3044745 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCATTCGCCAAGAGGATCGTGGAGCCTCAGCTGCTGTGCAGGCATGCCATCCCCAACGACGAGGGCTTGCTCTTCGAGGATCTGTGCTGCATCCACAACGTGGCTCTGTCCCGGACCCTGCGGCAGCTCTCCGACCTGGCCAGGCACGCCTGCTCCCTCTTCCAGGAGCTGGAGGGCGAGATCCTCAGCACCAACCAGCGGGTCTGGGTCCTGCAGAACAGGATCGGCCGGATCCAGCAGACGGCCGGCGGACTGGACCCCAAGCAGGAGGCAGTGCGTGAGTACCGTGCCTTCATTGATTTCTCGCAGGCGCTGAACTTCAGCTGCACAGCCTGGGTGGCACGGGTTTGCAGGGGGCAAAACGCATCCTTGGACTGTGCCCTTAGGGTGGACAAGTGCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84995 lncRNA upstream 67828 2976214 ~ 2976510 (+) True G68046
TU84933 lncRNA upstream 242294 2782339 ~ 2802044 (+) True G67994
TU84941 lncRNA upstream 246529 2792742 ~ 2797809 (+) True G67997
TU84927 lncRNA upstream 275501 2767502 ~ 2768837 (+) True G67988
TU84919 lncRNA upstream 288854 2746244 ~ 2755484 (+) True G67983
TU85148 lncRNA downstream 179829 3224574 ~ 3226499 (+) True G68151
TU85150 lncRNA downstream 182114 3226859 ~ 3228126 (+) True G68153
TU85167 lncRNA downstream 330092 3374837 ~ 3375148 (+) True G68166
TU85168 lncRNA downstream 330840 3375585 ~ 3375789 (+) True G68167
TU85192 lncRNA downstream 366233 3410978 ~ 3483649 (+) True G68189
AMCG00014163 mRNA upstream 13635 2996445 ~ 3030703 (+) True AMCG00014163
AMCG00014152 mRNA upstream 116028 2923400 ~ 2928310 (+) True AMCG00014152
AMCG00014161 mRNA upstream 129174 2909429 ~ 2915164 (+) True AMCG00014161
AMCG00014149 mRNA upstream 222882 2819542 ~ 2821456 (+) True AMCG00014149
AMCG00014148 mRNA upstream 253502 2788595 ~ 2790836 (+) True AMCG00014148
AMCG00014164 mRNA downstream 105150 3149895 ~ 3166217 (+) True AMCG00014164
AMCG00014166 mRNA downstream 127089 3171834 ~ 3176055 (+) True AMCG00014166
AMCG00014165 mRNA downstream 175458 3220203 ~ 3221921 (+) True AMCG00014165
AMCG00014171 mRNA downstream 294607 3339352 ~ 3370944 (+) True AMCG00014171
AMCG00014170 mRNA downstream 332947 3377692 ~ 3378273 (+) True AMCG00014170
TU84895 other upstream 334009 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 334009 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 334009 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 334009 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 914193 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1604455 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1604455 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 4301450 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 4368895 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6958313 10003058 ~ 10008648 (+) True G69406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_05680240_05680527.mRNA True 1290 mRNA 0.45 1 CI01000306 5679746 ~ 5681035 (+)