RNA id: AMCG00014182


Basic Information

Item Value
RNA id AMCG00014182
length 7399
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00014182
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3527017 ~ 3554734 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGGGAGCCGGCTGCTGGATTACCTCAAGGGGGGGAGGAAGATGAAAATGGTGGATATTGTAGCGCAGAAAATGCCCTCAGAAAGTGACGTTCACGTGGCCAGGAGCTTTCTAACGAAGATTTTGCGCAGTTCTATGAGGAGGAATGAACCTGCAAGCAGGCCTCACTCTTGGCACTCCACCAAGTTCACTGAGAGCCAATCGGAAGCAGCGAAAACACAAGTGACTCCCACGACCGTCTGGCACACGAGATACGATGCAAGCTCATCCTCACATGACCTCTCCAGCTCTTGGGACCAGACAAACCTGCGGCGCGTGTCGGACCAGTTCAGCTCCCTGGGCAGCATGGACAGCCTAGAGCACTCCTCGCACCCGTACCCCCCCGGCCGGCTCTCCCCCACCAAGTCCAACAACAGCATTGACCACCTGGCGGGCGGTGGCGGGGGCAGCAAACGCGACTCGGCCTACAGCTCCTTCTCCACCAGCTCCAGCACGCCGGATTACCCGCTGTCCAAGAGCAACGCGGCCTCCACCGAGAACATGCTCTACAAGGTGAACCAGTGGGAGTCCAGCGGCAGACACGGCAACGGCAGACACAGCCAGAGCCTGAGTGAGAGCGGCCGGACGGACGAGCGCCAGGGCTATCTGCAGCTGCCGCCCGGGACCGGAGGCCGAGAGAGCCCCAGGGCGGAGGAGCTGCCCGGCACCCGTTACTCCAGCTCCGGCAGATCCAACATCGGCCCGGTGTGGCACGTGCCCGAGAAGAAGAAGCGCGCCCCCTCTCCGCCGCCACCCCCGCCGCCGGTGCGCAGCGACAGCTTTGCGGCCACCAAGGTTCACGAGAAAGGTCTGGCGGCCCCTTACCTCGAGGGGTCCGGCCCGAACAACCCGCAGAAGCCTCCGGTCAGAGTCGGGGACTGGGGCCCCGTGGAGGCCAACGATAACCTTCCAAAAGCCCACCGTGTCCACGAACGAGGCTCCGAGACCAGACGGAGTTATAACCCGCCTCCGAAGACAGAGTCCCTTCCTCCGCACATCTCCATGGACACCTATAACAACAACCAGCTGAACTCGAACAAGCTGTACTCCTTGTCGAGCACAGACGTCCGGGTGGGCCAGCCTCCCTACACAGCCCCCCATCACCAGCGCCAGTACAGCGATGAAAGCACTTTCTATCCACAACCGAGATCGACATCTGTACCAAAGCAGCAGAACGTAGGCAGTTACTACAGCAGCATGCAGGAGCTCCCTACGGACGTCTTCAATCAGAACTACAACCAGGCCCACGTGCGGACCTCTAGTGCGTCCTTGTCCAGCGCTCCTATCGATCAAAACATGGAGAGTACCGGCCACAGCAGGTATTACTGTGTCACCGCAAGGCAGCCGGCCCAGACAGTCTCCCAGGCGTCTCTGGTGAGGGTGGAGGGGTGGAAAGGCAGCACAGGGACCGAGTCGGCCGCTGGTCTCAGTGAAAGGGGTTCTGCAGCCCCCCAAAAGGGTAATAAGGCCAAATACCCGCTACCTCAACCACAGCAGCCTTACCCTGACATCAAGGACAGCAATGGGTATTTCAGACTAGAGGGCAACCATGACAGGCCAGcgtcagctgctgctgctgtgcaggACGTCCCAGTGGTGAAACCTGGTGCAGAAGAGAGGGGCAGCCAAAAGAGTAACAATGGGTATAATGTGGAAACCCATTACATGAGCTACCCACCCAGTAAGCACGATGACTTGAAGAAGTATGGGGGTGTCCAGCCAAGAGACCAACCGGTAGAGCTGTGGGTGTCAGAAGAGGATGAGAAGATCAGTCCCCTGAAGACCCCCATGCTTCACTCTCTGGCTCAGGAGAGCATGGGTGTGCCCGACATGCCTGCAGATCCTCAGGGCAGCTGTGTTCTCGACCCGCTTGCAGCCAAGCAGGTGAGGCGCAGTGACCGCTATGCCACGACACTACGCAACGAGATCCAGATGAAGAGGGCTCAGCTGCAGAAGAGCAAGAGCGCTGCCACCTTGACCGGTCCCAACGAGGCGGAGGAAGACGCTGAGGTCTGGAAGGCCGAGTCGACGGAGAACTCCAACTCCTCCTCGGACGGCTCATTCTCCAGCACCTACAAGGACCACCTGAAGGAAGCGCAGGCTCGAGTCCTCAGGGCCACGTCTTTCAGGAGACGGGATCTGGAGCCTGTTTTACTGGAGCTTCCGGGACCCGACGCCCCTCCCGGTTACTCTTCCTCTGCCGTTAACCCCCTGCCTGGCTGCTCCGAGGTCCCCCAGAACAAGGCCAGCTCTGCCTCGGGAAGTGGCGGCCCTCACATGTCCCGAATTGGGGGCAGAAAACGATTCACGCAGGAGCAGAAAGTAAGGTCCTACTCGGAGCCGGATAAGATGAACGAGGTCGGGGTCGGGGAAGCGCAGCCTCACCCAAAGAAGGTCACGTCTTTTGCAGACCGCCGCAAATTCTTTGAGGCCACAAGTAAGACCGGCTTCTCTAAACCGGCGCCCAGGCAGACGGCCTTTGAAGAACACGGCGAGACCCGGCTGGCCAGGAAGCCGCATCCCGGAGAGACAGAGGAGTCGTGGCACGAGCGGAGGTCTCGCGCAGCCTCGTTCGGCTACGAGTGTTCGCTGGGCGCCCTGGACGAGGATAAGGACGAGTACGACGTCAGCAGGAAGGCAGCGGACCGGTACACGATGTTGGAAATGCAGAGGCTCGGGACTTTCGCGGAGTATGAGGCCACGTGGAACGAGCAGAGGAAGCCGTCGGAGTCCAGGACGACGGGGAGGTATCACTCGGCCGACAACATCCTGGATGCAGGGGCAGAGGAGTGTACGAAAACGTCGTATGTGCACGAGAGGTCCAGGTCGTCCCCGTCGGCGGATTTCCACGGACAGAACGTCCCTGTGCAAGGAAGGAAGACGGCGGATTACTCTCAAAGAGACCAAAAGCCGGCTGGGTTTCAAAACACGGACGATGAGCCGCCTCCCGCAAGGGTGGGAGCGCTCCTGGCCTGTCTCACCTGTCTTTGCTTTCCTTCAAGCCTCTCTCCTGGCTCCACTCTCTGTGCTCAGACCTCCgccagcacagagcagagcgCCTGGCTCTCCGTGCCTGACAGGCTGTCTGATGGAGGGCACAGAGAAAGCCGATTGGACCAGAAGCGGCCTGTGAGTGACCAGGGCTCGGAGCCCCCCCGTCACCCCTCCTACCGCCCGCCGCCCGCCGAGCTGCTCCTCCACGGAGACGCACAGAGCAGGGACCGGGCTGCCACCCTCCCCGGGGACCTCAGACACCACGACGGCGAGGCGCCCCCTGGCAAGGACGGCGGAGATGTGAACCCTGCCCTTCCCACTCGCCCGGAGCACCAAGCTGCGATCGATCCCGGAGTCAGAGCTCTCGGCGCCCCCCCCGAGCAGCCAGGGCCAGGGCCAGGGCCTTCCAGCAAGAAGAGAGGGCCGGTGCCACAGAGGCCCCCCCCGCCCAAACTAGACAAATACAGACGTCAGGAGACCACGTCCTCCTTGAGCGACTCCTCCGAGTCGCTGCTGGGCTCCCAGAGCGCCAGGGCGGCCCGGCCCCGCTCCCCCGGACCCGAGCGGCCCCCCGGCACACCCCCACCCCAGGCAGGGCCGGAGGAAGAGCAGGGGGCTGCGACGAGAGGAAACCCCCCGAAACCAGAGCCGGCaccaccccccgccccctccctctccccggCCCCCTCCTCCCAGGGTGCTGGTCTGCCGAGGTCCTCCATGGATGGACCGAGGACGCCCTCCCCACAGTTCGCTCCCCAGAGACTGACTGACAAGCCGCCCGTCTCCCTCCAGGATGAAGCTCCGAGCAGGGTCGAGAACGTGACGGAGAGCAATGCCGTGGTGAAGAAGGTGCCCATCAAGATCGTCCACGCCGAGAGCAGCCTGGAAAAGCAGAGCCGCCAGTACCTCCTGCACAGCGTGGGCCGGGCCGGCTCCCCCGAGGGCCAGGACGGTCCCCAGGTGAAGACCCTGGGCTCCTCGGAACAGTCCTACTCCCTGTTCTGCGCCTACACGCGGCCCGGAGATGCGGCGCCCAGCGAGCCGCCACCGCCCCCAGGCAGGGAGGGCAGCCTGAGCGCGGCGCAGGTCAGCGGCAACGGGGTACCGGGCATGACGGACAGCGCCGAGGACGACAAGAAGACCGAGGAGCTGGCCAGGGAGATCGTGGGCAAGGACAAGTCTCTGGCAGACATCCTGAACCCCAGCAGCAGGCTGAAGACCACCATGGACCTGATGCAGGGGATTTTCCCCCAGGATGATCAGCTGCTAGAGGGGGCGCAACAGCGCAGGAAAGTGGCCCCCAAGCAGGCCTCCCCTAGGGCCACGGAGGAGAAgaAGGAGGACGAGAGTCTGGCCGCGTCCGCGCTGGTCACCAGCTCCTCGTACTACAGCACGTCGGCCCCGAAGGCGGAGCTCCTGATCAAGATGAAGGACATGCAGGAGCAGATCGAGGAGCAGGACTCCGAGGACGAGCTGGACAACGACCTCTCCGAGAAGAAGCAGGAGCTGATCGACAGCATCAGCAGGAAGCTGCAGGTGCTGCGAGAGGCGCGCGAGAGCCTGCAGGAGGACGTCCAGGCCAACAACGCGCTTGGCGACGAGGTGGAGGCCGTGGTGCAGCAGGTCTGCAAGCCCAACGAGTTCGACAAGTTCCGCATGTTCATCGGGGACCTGGACAAGGTGGTCAGCCTGCTGCTGTCGCTGTCCGGGCGGCTGGCCCGGGTGGAGAACGCCCTGAACAACCTGGACGACAAGGCCTCGGCCGAGGAGAAGCGAACCCTGATGGACAAGAGGAAGCTGCTGATCAGGCAGCACGAGGACGCCAAAGAGCTGAAAGAGAACCTGGACCGCCGGGAGCGCGTGGTCTTCGACATCCTGGCCAGCTACCTCAGCGAGGACAACCTGGCTGACTACGAGCACTTTGTCAAGATGAAGTCGGCGCTCATCATCGAGCAGCGCAAACTGGAGGACAAAATCAAGCTGGGGGAGGAGCAGCTCAAGTGTCTGACGGACAGCCTGCCGCTGGACCACAGAGTGCCTTTCTGAGAGCTGCTCTTGGCCGCGGGACGTCCTGGACGCTTAGGGGCGGACGTGAGCGCACGGGCCTCCTCAGAGACGGACACGCGCACAAGAGAGTGCTTTCCGTTTGCGCTGCACTGTTGTTTTGCTGAAGCCGTTTCGTGTTCCTCTTCAAAGAGAACCGAATCTTTGTATACCTTTCCTGTCATTTCATCAGGAGTGGCCGTTTGCTGAAGTGACAATAAAGGAGTACCTAGGCAATTGATCTCTCCCACGCCTGCGATTATGGTAGTGCAGACTCGTATTGTATGTGGGGTATCGCAAACCCCTTGCTTCTGCATGAAATAAGCACCTCTGcaaatgactttttttgttttttaggctGAAGTGCATCATTCTTTTGTCTATTTTCTGGTTGAAAACCATAATAAACTGTGTTGTAGTAATTTATTCTAGCCTTTTAAATTGTTACAAAGAACCTGAGGATAGAACTGTGTTTTAATCTTAACCAGGAAAAACAATACCATGAAACCAACATGATTTTAACCATCGCAATCGCTCCTAAATCGTTTAGACTATAAGTGACATCATTACATAACTGTGACTGTTTGATAAGGCAAGTAAAAACAAAGCGAGACTGCGTGAGAACCGAGACGAAACACGATGTATCAGTCGAAATATGGTGCTGGTTCAGAAACAAATACCACTGCTGCATTGCTGTTTTGTCCGTCTCTTGAATTTGCTGCCAGGTGCACATCTTACgccttttgtatttttctaaatctCAGTTATTCTTTTCCGAAATGTAGAAATGATCCGTAAGCACCCATCCAACGGGACTTCTCAGACCTTGGCAGCCTGGGTACTATGTGTTTGAAAAGGTGCTCGTCTTGAAAGCTGGAAGGACCGGGGTACAGGAGCAGCCTTCACCCGAGAGCGAGATTTATCTGAAGTGGTGCTTGGCGATCTTGTGTCACTGCCCCTGAACAGTTtgttgatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgcttgttacTTGTGGAAGAActcgtcctctctctctgcttcggTCTCCTCCTCGGCAGGTTTCAGCCGGAGAAGAAAGCGTCAGATTGCAGCTGGAGTCCACGTCCTTCTCAAGTGCAAATAAGGGAATATTTAGAGTTTTCCCTGTTCGCTTTTctcaaatgttacatttcatgCTGGGTTAGCCTGTTatcgtttttttaaatgttatttttaaattctgagAGCGTGCCAGGAGGCAGGTAGACGCTGGGTGTAAAATGTGGAGTGTTCACACCGTCCAGAAGTGCCCTGTCAAGGTACCCAGGAGAGGATTGTATCAGCACATCTCTGCGGCGCTGCGATTTCCACAGAGACGCGTGTTGCGTGGTACAGCCTGGGACCCTGGCCTCGGATGGGCGTCGGGCAGGACTGGCATAATATACCCATTGTTGTTGCTATAGATTATTAAACTGAACTCTTAAATGAAGAGTTTAGTTGAAAtgtgaataattatttaatgataaaacattgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcaataCGGGGGCCCTTGCTCTAGCTTGACCAAAATATCCGACAGACGGCATCACAGACTCGCTGTGCGCCCCACATTGCCCCTCCGTTCATCACACTACTTTTAGCGTTTGCTTGGATaatcctgacacacacagtaaattatgaaataaacataCTCTGAGGGCTTATTTTTCCACTTCGGCTGGTATGTTAAGAggtctttttttatgttgtgtCCAATATAGCCACAAAGAAGGCTAATTTACAGCACATCGGTGTGACTGCATTGCTTGTCAATGagcctttttaatttaatgcaaatcCACAATCCTGTTAGAGGCGTGCACTCACTTGGTTTAACGCAGAACATGTCAGATTAACAGTAGATACCCTTTCAGGTCTGTTGCTGGTCTATGAGGATGAGTGTCCCTCGGCCCTGATGACTGGAGCCTAGTGTAGAGACTATACACACTCTGTACATCGCTGTGACTTATGGCTTATAATACTTGTACATGCTCAACTGTACTACTTTAATAAAGAGTCTggttgaatgtaaatgtaagttTGTTTCTTGTAATATAGCCTGTATTTGACTCTTGGTTCCTATTGTGTccaagtttgtttttgtccacGACTCGCAATTGAtggcatatatttttttttactgagaTTTTAAACTGCTGTGGTTTCCAGTtctgttttaaaggttttattagACTATATTTACCCGTATCTGCAGATTGAATTTGCTGAAATGCCCTGGTTTCATTTCCCT

Function

GO: NA

KEGG:

id description
K18625 SHROOM; protein Shroom

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85192 lncRNA upstream 43368 3410978 ~ 3483649 (+) True G68189
TU85168 lncRNA upstream 151228 3375585 ~ 3375789 (+) True G68167
TU85167 lncRNA upstream 151869 3374837 ~ 3375148 (+) True G68166
TU85150 lncRNA upstream 298891 3226859 ~ 3228126 (+) True G68153
TU85148 lncRNA upstream 300518 3224574 ~ 3226499 (+) True G68151
TU85329 lncRNA downstream 399632 3954366 ~ 3955265 (+) True G68292
TU85358 lncRNA downstream 529029 4083763 ~ 4083964 (+) True G68317
TU85370 lncRNA downstream 572742 4127476 ~ 4131718 (+) True AMCG00014196
TU85439 lncRNA downstream 738592 4293326 ~ 4293526 (+) True G68374
TU85441 lncRNA downstream 740083 4294817 ~ 4295819 (+) True G68376
AMCG00014184 mRNA upstream 15359 3489479 ~ 3511658 (+) True AMCG00014184
AMCG00014173 mRNA upstream 55029 3462068 ~ 3471988 (+) True AMCG00014173
AMCG00014176 mRNA upstream 74527 3434157 ~ 3452490 (+) True AMCG00014176
AMCG00014175 mRNA upstream 117910 3398291 ~ 3409107 (+) True AMCG00014175
AMCG00014174 mRNA upstream 129894 3391607 ~ 3397123 (+) True AMCG00014174
AMCG00014183 mRNA downstream 4184 3558918 ~ 3559709 (+) True AMCG00014183
AMCG00014188 mRNA downstream 27885 3582619 ~ 3582945 (+) True AMCG00014188
AMCG00014187 mRNA downstream 40361 3595095 ~ 3615081 (+) True AMCG00014187
AMCG00014186 mRNA downstream 62493 3617227 ~ 3629082 (+) True AMCG00014186
AMCG00014192 mRNA downstream 378524 3933258 ~ 3950277 (+) True AMCG00014192
TU84895 other upstream 816688 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 816688 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 816688 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 816688 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 1396872 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 1094466 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 1094466 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 3791461 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 3858906 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 6448324 10003058 ~ 10008648 (+) True G69406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062768 True 8247 mRNA 0.41 9 NC_007117.7 30430591 ~ 30456075 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_04249473_04264824.mRNA True 6177 mRNA 0.45 9 CI01000340 4249473 ~ 4266007 (+)