RNA id: AMCG00014243


Basic Information

Item Value
RNA id AMCG00014243
length 1242
RNA type mRNA
GC content 0.63
exon number 10
gene id AMCG00014243
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6234803 ~ 6239921 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCGCGCTCCTTCACCCTCATCCCGGCGCACAAGTACCGGCGCAGCGGCCGCAAGCAGGGTCCGAGCATTGGGGCGGCGCGGCGCCAGCGCAGGTCCACCTGGGGCCGCTTCGAGAAGATCCCCGCCGAGGCCGTTGGCGCCTACGTGGTGAGGCAGGTGTCCACGCTGGCCTGGAGGAGCAGGATGTTCGTGCAGGAGTTCCACCCGGCCCGGCCGTCCAGCCAGGAGGACTGCATCCTCGAACACTACAAGTGTCTGGGTTTATTGTTCAAGAGATGCACCCTCTTACTACCAACCAAGGACCGGTTAAAGTTTATCTACGGCAACTTTTCCCAGCGCTGCGCGGTGCATCCGGTGTGCCTGGGGTTCGCCAGCTTTGGGGCGTTTCTGCAGACGCTGATAGCTGGCTGGGACGAGCTGGAGTGTCACCGCGTCTTCAACTCCCTGTGCGAATTCACCAACCTGCCGCGCAAGATTCAGACCGCGGTGGCCAGCAAGCCAGGGGCCTCTGAGAAGCTGGAGGGGCAGATCCGGCTGTTCTGCAGGAGTGTGCTGCTGGACCCCTGGCTGAGCCGCAGAGACACGCTGTTCTGGCTGACCCGCATCCTCAAGCCCTGGCCCATGGTCAACCAGGCGCGCCTGCTCTTCATCTTCTACGGCCCCCTCACCCTGGATGGCAGGATCGGGTGGCAGAGTCTGTGCGACACCGTGGTGGCTGAGTGCAGTCTGTGGGACCTGGCAAAGGCACTCAAGCTGCTCTACAACGATCCCGAGACCAAGGAGTGGACGACCGACAGCGTCATCAGCCTCATCGAGGAACTGACAGTGCTGCCGGGAGAGTGGCTGCAGGAGAACGTGGCGCGGCTGCTCATCCTCTGTGGGAACCGCACCTGCTTCACCTTCATGGCTAGCCGGGCGCTGAACGGCCGCGTGGCGGAGATCGCGCGGCTGCTGGTGTTCCTGATCCTGGTGTGCGAGAAGGACGGTTACTGCATGAACTGGTCCGTGAAGATGATGCAGCAGATCAGCAGGGTCTTCCCCGGCTCCCCGGAGCGCTGGTCCTTCGTCCAGAGCGTGGAGAACGTGTTCTCTCAGGTCACCATGCAGATGTACGAGTCGCTGATGGCCGGCGGGCGGGAGGCTGAAGCCGACACGTTCCAGAACCTGTGCAGCATCCTGAACGCCAGTGCCCACTTCCACACCGAGATGGTCTACATGATCATCAAGGGCGACTGA

Function

GO: NA

KEGG:

id description
K10321 FBXO47; F-box protein 47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85846 lncRNA upstream 28227 6204178 ~ 6206576 (+) True G68686
TU85805 lncRNA upstream 119839 6112656 ~ 6114964 (+) True G68665
TU85787 lncRNA upstream 124497 6073717 ~ 6110306 (+) False G68649
TU85780 lncRNA upstream 124497 6107041 ~ 6110306 (+) True G68649
TU85783 lncRNA upstream 124497 6107041 ~ 6110306 (+) False G68649
TU85863 lncRNA downstream 4981 6244902 ~ 6247049 (+) True G68698
TU85895 lncRNA downstream 473250 6713171 ~ 6714821 (+) True G68728
TU85912 lncRNA downstream 503942 6743863 ~ 6744111 (+) True G68738
TU85947 lncRNA downstream 816786 7056707 ~ 7058319 (+) True G68771
TU86061 lncRNA downstream 1229157 7469078 ~ 7469310 (+) False AMCG00014272
AMCG00014237 mRNA upstream 180368 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014229 mRNA upstream 355546 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014224 mRNA upstream 460042 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014225 mRNA upstream 494882 5721897 ~ 5739921 (+) True AMCG00014225
AMCG00014223 mRNA upstream 591314 5607773 ~ 5643489 (+) True AMCG00014223
AMCG00014253 mRNA downstream 491703 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014259 mRNA downstream 799833 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014260 mRNA downstream 810415 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014261 mRNA downstream 833403 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014267 mRNA downstream 989152 7229073 ~ 7237562 (+) True AMCG00014267
TU85565 other upstream 1582839 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 1582839 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 3524474 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 1106274 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 1173719 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 3763137 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 8096937 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 9435710 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile