RNA id: AMCG00014316


Basic Information

Item Value
RNA id AMCG00014316
length 2538
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00014316
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9004500 ~ 9020633 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCCCGACGAGAAGCAGGACTGTGAGTGTGCGCCACCACAGGCCGAGCCTACCCCCGCAGGAGGATCCGACAGATCACCAGGAGAAGCTGACATAGAAAACCCAGAAGCAAGCCGAATGAAGCGAGCAGCTGCAAAGCATCTAATAGAACGCTACTACCACCAGTTAACTGAGGGCTGTGGAAATGAGGCCTGCACGAATGAGTTTTGTGCTTCCTGTCCAAGTTTCCATCGTATGGATAACAATGCGGCGGCCGTTAAGGCCCTCGAGCTGTATAAGATTAATGCAAAACTCTGTGATCCTCATCCCTCCAAGAAAGGAACCAGTTCTGCTTACCTAGAAAACAGTGCCAAAGGAGCCAACAACAACTCGTGCAGCGACAGGAAAATGAACCGGAAGGAGGCGCATTCCGCAAGGGATGACTTTAAAGATTTGAATTTCCTAACAGAAGAGAAGGTGTATGAGATTCTGGGGATGTGTGGAGAGAAAGAGGATTACTCCCCATTGATACGTGTGATTGGCCGAGTCTTCTCCAGCGCCGACGGCTTGGTGCAGAGCTTCCGCAAGGCCAAGCAACACACGAAGGAAGAGCTGAAGTCCCTCCAGGGCAAAGACGAAGACAAGGATGAGGATGAGAAGGAGAAAGCCGCCTGTTCTGCTGCTGCTATGGAGGAAGACTCGGGAGCTTCCTCTTCCAGGACGGGAGAAGGTGCCGCTTCCGGGGCTAACAATGTGCACAAGCTGGGCCCCGACGAGGTGTCTGTGGACATTGACGCGGTGCGCAGGGTCTATAACAAACTGCTGGCGAATGAGAAGATCGAAACTGCCTTTCTCAATGCACTGGTGTACTTGTCACCCAACGTGGAATGTGACCTGACGTACCACAACGTGTACTCAAGGGATCCCAACTACCTGAACTTGTTCATCATCGTGATGGAGAACAGCAACCTCCACAGCCCCGAGTATCTTGAGATCGCCCTGCCTTTGTTTTGCAAAGCCATGAGCAAGCTCCCCCTCCCGGCTCAAGCCAAACTGATCCGGCTGTGGTCCCAGTACACCGCCGAGCAGATCCGCCGCATGATGGAGACCTTCCAGCAGCTCATCACCTACAAAGTGATCAGCAATGAGTTCAACAACCGCAACCTCGTCAACGATGATGATGCCGTGGTCGCGGCCACCAAATGCTTGAAAATCGTTTACTATGCAAACGTCCTCGGTGGGGACTTGGACACAGACCACAATGAGGAAGAGGATGATGAGCCCATCCCCGAGTCCAGCGAGCTGACCCTGCAGGACCTCCTGGGGGAGGAGCGGAGGAACAAGAAAGGCCCCCGGGTGGACCCACTGGAGACAGAGCTGGGCGTCAAGACCATCGACTGTCGCAAACCACTCATCCCTTTCGAAGAGTTTGTGAACGAGCCACTCAATGACGTGCTGGAGATGGACAAGGACTACACCTTCTTCAAGGTCGAGACGGAGAACAAGTTCTCTTTCATGACCTGCCCGTTTATCCTCAATGCTGTAACCAAGAACCTCGGACTGTACTATGACAATAGGATTCGAATGTACAGTGAGCGGCGCATCACTGTGCTTTACAGCCTGGTTCAGGGACAGCAGCTTAACCCCTACCTGCGACTGAAAGTGCGGAGAGACCACATCATCGACGATGCCCTTGTGAGACTTGAGATGATTGCCATGGAAAATCCTGCAGACTTGAAGAAACAGCTGTATGTGGAATTTGAAGGAGAGCAAGGTGTAGATGAAGGAGGAGTTTCCAAAGAATTCTTCCAGCTTGTTGTGGAGGAAATCTTCAACCCCGATATtgGAATGTTCACATACGACGAAACCACCAAACTGTTTTGGTTTAACCCTTCTTCGTTTGAAACTGAGGGCCAGTTTACTCTCATTGGCATCGTTCTGGGCCTGGCCATTTACAATAACTGTATCCTGGATGTGCATTTTCCCATGGTCGTCTATAGAAAATTATTGGGCAAGAAAGGAACTTTTCGTGACCTGGCAGATTCTCATCCGATGCTGTTCCAGAGTTTAAACGAACTTCTGGACTACGAAGGCAGTGTGGAAGATGACATGATGATCACGTTTCAGATTTCACAGACTGATCTCTTCGGGAATCCCCTCATGTACGATTTAAGGGAAAACGGAGATAAAATCCCCGTTACCAACGAAAACCGGAAGAACCTAGACTTTCAAGCACTTGAAGAAACCACAGAATACGATGGAGGGTACAGCCGGGATTCACGCATTATTAAGGATTTTTGGGAAATCGTTCATTCTTTCGCAGAGGAACAGAAGAGGCTCTTCCTACAGTTCACCACGGGCACGGACAGAGCCCCCGTGGGCGGCCTAGGCAAGCTCAAGATGATTATCGCCAAGAACGGCCCAGACACAGACAGGTTACCAACGTCTCACACTTGCTTTAATGTCCTCCTGCTTCCTGAGTACACGACCAAGGAGAAGCTCAAAGAGAGACTTTTGAAGGCCATTACCTATGCCAAAGGATTCGGCATGTTGTAA

Function

GO: NA

KEGG:

id description
K10587 UBE3A, E6AP; ubiquitin-protein ligase E3 A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86492 lncRNA upstream 113666 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 268561 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 868290 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 989497 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 1129758 7874527 ~ 7874742 (+) True G68982
TU86614 lncRNA downstream 345904 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 880817 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 953791 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 1033858 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 1034744 10055377 ~ 10055733 (+) True G69431
AMCG00014313 mRNA upstream 32068 8943995 ~ 8972432 (+) True AMCG00014313
AMCG00014315 mRNA upstream 128668 8875167 ~ 8875832 (+) True AMCG00014315
AMCG00014314 mRNA upstream 179968 8795228 ~ 8824532 (+) True AMCG00014314
AMCG00014309 mRNA upstream 496813 8478982 ~ 8507687 (+) True AMCG00014309
AMCG00014308 mRNA upstream 603141 8386165 ~ 8401359 (+) True AMCG00014308
AMCG00014321 mRNA downstream 69241 9089874 ~ 9130531 (+) True AMCG00014321
AMCG00014323 mRNA downstream 116398 9137031 ~ 9144426 (+) True AMCG00014323
AMCG00014322 mRNA downstream 137111 9157744 ~ 9172062 (+) True AMCG00014322
AMCG00014324 mRNA downstream 238661 9259294 ~ 9273055 (+) True AMCG00014324
AMCG00014327 mRNA downstream 308057 9328690 ~ 9361176 (+) True AMCG00014327
TU86046 other upstream 1587906 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 1655033 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4352536 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4352536 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6294171 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 982425 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 5316225 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6654998 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6654998 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7108892 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062891 False 4104 mRNA 0.45 11 NC_007117.7 38773376 ~ 38790064 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_08710260_08719614.mRNA True 3149 mRNA 0.47 11 CI01000340 8710260 ~ 8720007 (+)