RNA id: AMCG00014344


Basic Information

Item Value
RNA id AMCG00014344
length 864
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00014344
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10156465 ~ 10162165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGAAAACTCATAAAGGTTTCCTGTATATTACTTTGCCTAGGCAGACTGGCTCAGGATTCAGACAACCTGCCTGTTCGACTCTCGCTGACCTACTTTCACGAACAGAGCTGTGGCTTCACAGAGGGAGAGTTTAATCCTGCAGAGATcaacactgctttttttttttttttggtcacttACAGGGGACACAGGAAAACTTTCACTTTAAGGCACGCAGAGGGGCCCACACTGAAAGACGATGGCTTTCAAAAATCTCCATCTGCAGCTATGACCAAAGCCGAGCGACGAGCCCCTGCCATATCACCGTCCGAGGCGAAAACATTTCTGACGTCTCTAAAACGACACAAAAGAAACCTGTGGGACCGCAGCCGTCcagatgtccagcagtggctTCAGCAGTTCATGTACATGGGCTTTGATGAAACTAGATTTGAAGCTGATCTGACCTACTGGATGGATCGATCAAGGCAAAATGACTACTATGGGCATCAACACCATTATGACGAGAATGCGCCCATTGGCCCTCGTGACCCGGGTTCCTTCAGGCACGGAGCCAACGTCAACTACGATGACTATTAAACAGCCTCTCGTTCTCAAATACCAGATCTGTACTCAGAAGTCTGTGACTGAAAGTGCAACACCGCATGAGCAAGCACAAaattgccatttttgttttctaatattctTTGATTAGAGCATTCCACAGTAATTTTGTCCCTGAATGAAAGTATTAGGAATGCATCTCATAGTTACTTCTGTCTGTGAACTCTATTATAGAATGTGTGTATAGCACTGTATGTCTAACAATATCCTGCTTGTTGTGTATAACCTTGAATTTGCTATGAATAaaattgattttcaa

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0007417 central nervous system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86745 lncRNA upstream 4552 10147979 ~ 10151913 (+) True AMCG00014345
TU86731 lncRNA upstream 100732 10055377 ~ 10055733 (+) True G69431
TU86728 lncRNA upstream 101754 10054491 ~ 10054711 (+) True G69428
TU86698 lncRNA upstream 128114 9974424 ~ 10028351 (+) True G69400
TU86679 lncRNA upstream 246417 9901450 ~ 9910048 (+) True G69384
TU86759 lncRNA downstream 61506 10223671 ~ 10224035 (+) True G69457
TU86811 lncRNA downstream 330982 10493147 ~ 10493396 (+) True G69499
TU86857 lncRNA downstream 675039 10837204 ~ 10838230 (+) True G69540
TU86875 lncRNA downstream 797161 10959326 ~ 10961929 (+) True G69556
TU86944 lncRNA downstream 1058905 11221070 ~ 11221274 (+) True G69610
AMCG00014345 mRNA upstream 5435 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014342 mRNA upstream 10763 10125154 ~ 10145702 (+) True AMCG00014342
AMCG00014343 mRNA upstream 84864 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014338 mRNA upstream 161794 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014335 mRNA upstream 174872 9959233 ~ 9981593 (+) True AMCG00014335
AMCG00014352 mRNA downstream 66835 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014351 mRNA downstream 146257 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014350 mRNA downstream 190680 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014357 mRNA downstream 503228 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014356 mRNA downstream 558919 10721084 ~ 10754147 (+) True AMCG00014356
TU86705 other upstream 147817 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 2739871 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2806998 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5504501 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 4174693 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5513466 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5513466 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5967360 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 6303516 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073866 True 919 mRNA 0.43 4 NC_007120.7 6371926 ~ 6380653 (-)