RNA id: AMCG00014357


Basic Information

Item Value
RNA id AMCG00014357
length 1332
RNA type mRNA
GC content 0.37
exon number 4
gene id AMCG00014357
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10665393 ~ 10671738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATACAGTTAGCAGAATAATGAACGGCAGCAGTACAGATCCACAGgattttgtaatattgtttcTGAGAACTCAGCCAAAACAATGAATCCTGCTGAGCGAACACTTCGCAGTGACTTTGACAATCAGCAAAAGTGCCTGATGTCCACAATATTTATTCTTACTCTTGCTGCAATAATGTCTTCATTAATGTCAGCTGTCTCTCTTTATCACATCATGACATTAAAAGCAGAAGTTGCCTGTCTAAAGACAGAGCTTTTCAAAAAGCGAGAAGAGCAAGTGACTTCCTTAACCCACCGTGACAGAGAAATAGCTCATCCATCTGATATCAAACATCAGAAAATGCAGTTCTTAAATGACGAAGATGTAAACAAGCCCAGCACGGAGAATCCAAAGACACAGCAGAAGCAACACAGGATAAAGCGTGGCAGTCCTGATAATGTAACCGtgtttcagcCCTGTTTGCAAATGATTGCAGATAAGAAAAGAAACAGCACCAAAAAAGGAATTGTAAAACTCGAAGAAGGTGACAACATTGAGCTCCTGATACCCCGAAATGAGGCGAATGTGTCTATGGAAGGAGATTCGACATTCTTTGGTGCAATCAAACTTGTCTGAGTGGTGTGTATACGGCTTGGATATCTGCCATTTTGAGTTCTGGGGAAACCAGATGAGATTGTGCACAGTTCTAAATCTGTAGACATGTTTTGGTGAAGTAATGTCTGCTCAGCTTGTTGTGATACAAACAGGAAGCCCAGTGAATGCGTTAGCACTTCTGccgtttgattttctttcttttttttaagtaaaatatagaATCTTGGCCATTCCAGTCAGCTTTTCAAAGACCAATGAAACAGATGTTCATGTCTCTGGGGTTTGAGAATGTCCCAATGTCTGGatattttttctaaaagaaGATGCGGTTATTCAATGCGAGACACTTCTTCACTTCAATAGGGTGAAATCCACTCAGAAGTCAGAATggagtttaaatgtaataaataaaggcaTTCAGGACGTGAACGATTTATACATCCTATATGAACTGTGAAGGTGACCTAAAAGGACTTTAATACACTTTAAGAAAAAAGGACCATGaatgataaatgtaaaaaactcTGCTACATGTGTTTCTAGCTAAATTACATGATCTTCACCAGTTTACTGCAAATTCAGCTTCAAAGtattcattttatcatttttaatttactgttattctcaatgtataaaatatatatatttttaaatctgatgtatttattaattgagaTGTGAAACAAGTAATTTCAAtgttataaagcaaacaaacaaataaacaacaattgaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86811 lncRNA upstream 171997 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 441358 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 513480 10147979 ~ 10151913 (+) True AMCG00014345
TU86731 lncRNA upstream 609660 10055377 ~ 10055733 (+) True G69431
TU86728 lncRNA upstream 610682 10054491 ~ 10054711 (+) True G69428
TU86857 lncRNA downstream 165466 10837204 ~ 10838230 (+) True G69540
TU86875 lncRNA downstream 287588 10959326 ~ 10961929 (+) True G69556
TU86944 lncRNA downstream 549332 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 969345 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 1047580 11719318 ~ 11722767 (+) True G69722
AMCG00014350 mRNA upstream 284972 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014351 mRNA upstream 347391 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014352 mRNA upstream 423132 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014344 mRNA upstream 503228 10156465 ~ 10162165 (+) True AMCG00014344
AMCG00014345 mRNA upstream 514363 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014356 mRNA downstream 49346 10721084 ~ 10754147 (+) True AMCG00014356
AMCG00014355 mRNA downstream 94898 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014362 mRNA downstream 389857 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014363 mRNA downstream 425829 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014361 mRNA downstream 453661 11125399 ~ 11129360 (+) True AMCG00014361
TU86705 other upstream 656745 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3248799 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 3315926 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6013429 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 3665120 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5003893 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5003893 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5457787 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5793943 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile