RNA id: AMCG00014369


Basic Information

Item Value
RNA id AMCG00014369
length 3625
RNA type mRNA
GC content 0.46
exon number 20
gene id AMCG00014369
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11177961 ~ 11220774 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTGGATCGGATACACCGTGAATGTAGCCATGAACTCGGCCGAGCAGACCGTTACTTGGCTCATTACTCTGGGGGTCCTGGAATCGCCGAAAAAGACCATCTCGGATCCAGAAGGCTTTCTGCAGTCGTCCCTGAAAGATGGTGTGGTCCTCTGCAGGCTGCTGGAGCGGCTGCGCCCCGGCGCTATCGATAAAATTTACCAGGAACCGAGGAGCGACAGCGAGTGTCTGAGCAACATCAGGGAGTTCCTCAAAGCCTGCGGCTCCTTCCGAGTGGAGACATTTGATGCCAATGACCTGTTTCAGGGTCAGAACTTCAGCAAAGTCTTGAATTCCCTGGTGGCACTAAATAAAGTAACCGCAGATATAGGCGTGGGAAGTGACTCTGTATGTGCTCGCCACTCCTCCTCCCACCGGATCAAGTCCTTTGATTCCCTGGGCTCACAGTCCTCCCTCAGCAGATCCTCCAAGCTTTTGCAGAACCAGTACCGCAGCTTGGACATGTCGGACAACAGCAACCATCAGCTGGTAGTGAAAGCACGCTTCAACTTCCAGCAGACCAATGAGGACGAGCTTTCCTTCACCAAGGGAGACATCATTAATGTCTCCAGGGTGGAGGAGGGTGGCTGGTGGGAGGGGACCTATAACGGCAAGACCGGCTGGTTCCCCAGCAACTACGTCCGGGAAATCAAAGCTAACGAAAAACCAGTCTCTCCGAAATCTGGAACTCTCAAAAGCCCTCCAAAAGGCTTCGATACCTCTGCAATCAGTAAGACCTATTACAATTTGgtgCTACAGAACATTCTAGAAACAGAGACTGAATATGCCAGGGAACTCCAGAGCCTTCTGTCCAATTACCTGCGCTCTCTGCAAAGTACTGAGAAGTTAAGCTCTTCTGACATCACTCATATACTGGGAAACCTGGAAGAGATCAGCACTTTCCAGCAGATGCTTGTCCAGTCTCTAGAGGAGTGCACAAAGTTGCCCGAAGCACAGCAGAGGGTGGGTGGTTTCTTCCTGAACCTCATGCCCCAGATGAAGAACCTCTATGTGGCCTACTGTGCCAATCATCCATCAGCGGTCAATGTCCTCACGGAGCACAGCGAAGAGCTGGGCGAGTTCATGGAAATGAAAGGTGCCAGCAGTCCTGGGATCCTTATGCTAACCACAGGCCTGAGCAAGCCCTTCATGAGACTTGACAGATACCCCACCCTGctgaaggagctggagagacACATGGAGGCCCAGTGTCAGGAGGTGCGCAAGAGAAaggagctggagctgcagaTCCTGACCGAGTCCATCCGCAGCTGGGAGGGAGAGGACATCAAGACGCTGGGCTCTGTCCTCTACATGTCTCACGTCATGATCCAGTGTGCTGGCAGTGAGGAGAAGAATGAAAGGTACCTCCTGCTGTTTCCCCATGTGTTACTAATGCTGTCTGCCAGCCCCAGAATGAGTGGATTCATTTATCAGGGTAAACTACCACTAACAGGAATGACAATCTCCAAACTAGAAGAAAGTGAAACtcacaaaaatgcatttgaaatttcTGGCAATATGATCGAACGTATATTGGTGTCATGCAACAACCAGCAGGATCTGCAAGACTGGGTGGATCACCTGCACAAGCAGACTAAAGTCACCACAATGGGAACTCCAACAATCAAACCACAGTCTGTACCCTGCCACACAGATCTCAGTAAAAGCCCTAAAACCATGAAGAAGCTACTCCCTAAACGCAAGCCGGAGAGGAAACCGTCCGATGAAGAGTTTGCATTGAGAAAAAGTACGGCAGCACTTGAGGAGGATGCACAAATTCTCAAAGTAATTGAGGCGTACTGCACTAGTGCCAAAACACGACAGACACTTAATTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTGATGACGACCAATCCAGCCTAGAATCACTGGGCCGTCGCAGTAGCCTTTCCCGCTTGGAGCCCTCCGACCTCTCCGAAGACTCAGACTATGACAGTATATGGACAGCCCATAGTTACAGAATGGGTTCGACAACTCGGTCTAGGAAGGAATCGGGCCCTCATATGCTATTTCCAGAAGAGGAGAAGATTATTGTGGAAGAGACCAAAAGCAACGGTCAGACTGTAATTGAAGAGAAGAGCCTGGTGGACACAGTCTATGCATTAAAGGACGAAGTACAGGAACTGAAACAGGATaacaaaaagatgaaaaagtCTCTCGAAGAGGAGCAGAGAGCCCGTAAAGAATTGGAAAAGGTTGTGAGGAAAGTATTAAAGAATATGAATGATCCTTCCTGGGATGAGACCAATTTGTAGAGAGGTTTCAGctggtttacatcaaaagcAGACGGGCCGTTTTCAGCAGGACACTCTAAAACAGATTAAGACATCCACTCGATCCCGGTCAAATGAGCGCAAGCCTATATTGGAAAATTAACCTGAGCCTTCAGGGATCCAGCAAACCATCCGTCCCCAACGCTGCAGCACTGATTGAGCCATAGAACAAGACCACATTGGAAGTGTGTACGATCTGACCATACAGCATCGCTTGAGGGGCTGATGGGTGGCTTGCCGAGGCATCCCCTGACCAAACAGCATTAGCTTTTCACCTGTGTTACCTGAGCCAGAGTTACCCAGGGGCAAATGGTGGAAAGTGCTGAGTATGAAACATCAGATCCAGATCTTCACACCCGTGAGCTCTGGTACTCCtcacttttcttgttttgttttttttatttgcgaTCAGATTTCAGATTAGCcacaaaaattacaaatctgCACAAATGACACATGTTATTGGTACTGGATGTTTCAATCTGGCCAGAGAGACTAAAACACAGGGATTTCAAAGAGCGTAGAATGGAGTTTCAATGCGTGTGATCCGGTGAAGTGGAGATTTTGGCTTCAAATGTGTGAAGAGATGGCTCGGTTACTGCCTTCATTTAACTTCAGAGCACTTCAATTTCTGCTGCTCTCAATCTTCAGGAGCACATAACCGAGATATAgaattaacttgttttatttttttatggaaaaaaaaacagcaatacaacTCTCTGATGAATACTGGAAAATGTTCAGGTAAATTATATACTGGTCAACTTTTGGAACCTTTTctagatgtttttgttttgcaattacctcattttgtttctgtatattttttgcggggaggggtgtgtgtgtgttttttattgtttactaTAAGATTCTTAAAACATAcctttatactgtaaatatcaCATACAATTGTGACTTTGGAAGTGGATTTCTTGATATTGCTCCTATATCTGGCCGTCTTTCTTAAGATCAGTTGCTCTAAACAAAACCCGTCCCTTTGACCTTCACAGGCCTTCGACGCAtccgatatgacttaaaaagaTTTCTAAAAGATGCCTGGAAAGTCTTTTTGCATAGAAATCTTCAAagaatatttcatgttttccctaaattatgtatttaaattaacttgctgtaattaaaacacCACATAAGCACTGTAGGGTTCAGAACAAAGAATGTCCTTCATATTTCTTGTATAATTGTTATCAGAAATCCTGTCCTGTGaccactgtatttatttaatttctctcaCCTACTAACTTG

Function

GO: NA

KEGG:

id description
K13710 ARHGEF7, PIXB; Rho guanine nucleotide exchange factor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86875 lncRNA upstream 216032 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 339731 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 684565 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 953926 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 1026048 10147979 ~ 10151913 (+) True AMCG00014345
TU86944 lncRNA downstream 296 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 420309 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 498544 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 563091 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 1379330 12600104 ~ 12600313 (+) True G69778
AMCG00014361 mRNA upstream 48601 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014363 mRNA upstream 72111 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014362 mRNA upstream 91359 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014355 mRNA upstream 376651 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014356 mRNA upstream 423814 10721084 ~ 10754147 (+) True AMCG00014356
AMCG00014370 mRNA downstream 171615 11392389 ~ 11393405 (+) True AMCG00014370
AMCG00014371 mRNA downstream 319658 11540432 ~ 11561870 (+) True AMCG00014371
AMCG00014373 mRNA downstream 385194 11605968 ~ 11640460 (+) True AMCG00014373
AMCG00014376 mRNA downstream 423254 11644028 ~ 11659546 (+) True AMCG00014376
AMCG00014378 mRNA downstream 447382 11668156 ~ 11678181 (+) True AMCG00014378
TU86705 other upstream 1169313 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3761367 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 3828494 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6525997 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 3116084 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4454857 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4454857 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4908751 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5244907 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073004 False 6971 mRNA 0.43 22 NC_007120.7 21536122 ~ 21570566 (+)