RNA id: AMCG00014871


Basic Information

Item Value
RNA id AMCG00014871
length 1223
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00014871
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37945147 ~ 37954312 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCGTTGTCGTTTCTATTCGGAACCCGTTTCGCGTAACATCGTTTCCCAACCGGAGGTTTATAGTGACACATCGGAAGTTGTCtacatgtgtgcatgttttgcGAAACCGTATCCCGGACCGAAACACGTCTCCGTCTATCGTTTGTAGTAAAACTTAGATTATTGGAGCGGGACAGGGTCAGGATATGTCAGCGTCTCTTATGAGAAAGGGCCTGGAGCTGCTCAGCGATGATCTAAAAGACACAGAGAGGCGGGGGAAAaagaagagggagagtgggGAGAAGGCAGGAGGGGCAGGCAGTGTGAAGGACTGTATCGGCACCAACCGGCAGGGCGTGTCCAAACAACGGAGGCAGCAGAGTCCCAGTCAGATGAACACAAACCTGCAGTATTTTCTGGGAACAGGATTCAAAACGGAGCAAGCAGTTACAGAGAAGATTTTGACCCAGCAACGGGGCAGACAGTCTCGGGACGTCCCACAGCGAAGGGAGCAGCCACGGGCAAAGGAGCCGCGGTCTGTCTTCACAGAGGAGGAGTTCCAGCAGTTCCAGAAGGAATATTTCGGCAGGACAGTGGAGGGAGTGCAGTGACCCCCACATTACGCCTGAAATGCtggtggagagggggagggggtcagTCCCTCAAATGCAATAATGTTGGTCACCCTATTCAGGTCTCACCTCTGAAATCCATGAAATCTCTCTTGCTTATTACTATAAGGgaaattcacacaaaaataataataatttaaaaaaaaagtaaatccaTATTGGCATTTTAATACAGTGAGCAAAACTATGCAGGACCATGCAGTCAAGTCAGTGTATtagtcaatcaatcaaacaaatttTAATGGATTCCATAGAAACCTACTGCCTTCCCCTGTCTCCATTGTAGATACCCAGCTCAGCTGAGAGCAACACTGATGGCCCATGTGCTGAGGTCAGTGGTGGCTCAGGCATCTGAGCAtagaggtcaggggtcagttACATGTGAATGGCCTGCATTGTGTGAGCCAGGCTGAGGGTGTGAGAATGGGTAATCCAATAAAGCACAGAGAGGTATCAGCAGTGTGTCTTTTCTGGTCTGTCTACTGTaacaatactgtactgcacattGACTGTGCTACACATTGTACTCTGTGTACTACACACTACTATACGtactcactgtacatacactaCTGTACTGAATCACTGTACTCAAAGAGGAGTGTGCAAA

Function

GO: NA

KEGG:

id description
ko03060 Protein export
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92314 lncRNA downstream 100804 37843170 ~ 37844343 (-) False AMCG00014865
TU92299 lncRNA downstream 118445 37826479 ~ 37826702 (-) True G73918
TU92297 lncRNA downstream 161572 37779333 ~ 37783575 (-) False G73916
TU92291 lncRNA downstream 241099 37703846 ~ 37704048 (-) True G73911
TU92288 lncRNA downstream 261605 37683239 ~ 37683542 (-) True G73908
TU92368 lncRNA upstream 109035 38063347 ~ 38071617 (-) True G73980
TU92433 lncRNA upstream 223662 38177974 ~ 38180598 (-) True G74030
TU92434 lncRNA upstream 225735 38180047 ~ 38180598 (-) False G74030
TU92461 lncRNA upstream 327125 38281437 ~ 38283517 (-) True G74052
TU92512 lncRNA upstream 354773 38309085 ~ 38340216 (-) True G74093
AMCG00014866 mRNA downstream 57184 37871406 ~ 37887963 (-) True AMCG00014866
AMCG00014865 mRNA downstream 80664 37802094 ~ 37864483 (-) True AMCG00014865
AMCG00014860 mRNA downstream 328785 37602472 ~ 37616362 (-) True AMCG00014860
AMCG00014861 mRNA downstream 386938 37554889 ~ 37558209 (-) True AMCG00014861
AMCG00014859 mRNA downstream 523980 37417533 ~ 37421167 (-) True AMCG00014859
AMCG00014875 mRNA upstream 83051 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014874 mRNA upstream 93174 38047486 ~ 38052112 (-) True AMCG00014874
AMCG00014878 mRNA upstream 171731 38126043 ~ 38128745 (-) True AMCG00014878
AMCG00014879 mRNA upstream 187595 38141907 ~ 38160087 (-) True AMCG00014879
AMCG00014883 mRNA upstream 307218 38261530 ~ 38263484 (-) True AMCG00014883
TU92296 other downstream 161572 37779333 ~ 37783575 (-) True G73916
TU92209 other downstream 619840 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1551654 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1690960 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1762796 36101358 ~ 36182351 (-) True G73604
TU92499 other upstream 389010 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 457848 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 477951 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 536011 38490323 ~ 38490940 (-) False AMCG00014891
TU92596 other upstream 643056 38597368 ~ 38644538 (-) False G74160

Expression Profile