RNA id: TU84388


Basic Information

Item Value
RNA id TU84388
length 424
RNA type TUCP
GC content 0.52
exon number 3
gene id G67577
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 58449 ~ 107122 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATCTCCAATACGGAGCCCACAGATATCGGCACATATTACTGTGCAGCACTCGACTACAGCCAGGTTCTCTTTGGAGGGGGAAGCACACTCCTCCTCAGAGaTACTGACTCGAGGTTTATTCAGCCTCCTCTGTTTCAGTCTCTCCAGTCAGGACTCAACTCTGACCTGCAGTGTATGATGGAAAGTAGGAATCTCAGGGCAGACCACCGTGTCCACTGGTTTATTAAACTCTCAGGACAGCCCTCCTCAAAAACACCTTTCACAGCCGGCAGCATGATTCAGAGCAGCTCTGAGGACGACCTTCCTGCACAGGGCTGTGTCTATAACCTTTCCAAGAGGAACCTCAGCTGCTCTGATGCTGAGTCTGTCTACTGCGCTGTGGCCACATGTGGGGAGATCCTGTTTGGCAAAGGGACAGAGCAA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84399 lncRNA downstream 40066 147188 ~ 247002 (+) False AMCG00014061
TU84405 lncRNA downstream 62782 169904 ~ 320321 (+) True G67587
TU84528 lncRNA downstream 694142 801264 ~ 801464 (+) True G67684
TU84529 lncRNA downstream 697415 804537 ~ 804746 (+) True G67685
TU84535 lncRNA downstream 874717 981839 ~ 1022813 (+) True G67690
AMCG00014062 mRNA downstream 17021 124143 ~ 136221 (+) True AMCG00014062
AMCG00014061 mRNA downstream 29742 136864 ~ 162410 (+) True AMCG00014061
AMCG00014066 mRNA downstream 123456 230578 ~ 241128 (+) True AMCG00014066
AMCG00014068 mRNA downstream 145153 252275 ~ 257660 (+) True AMCG00014068
AMCG00014069 mRNA downstream 172008 279130 ~ 349175 (+) True AMCG00014069
TU84560 other downstream 1376663 1483785 ~ 1484093 (+) False AMCG00014099
TU84663 other downstream 1728310 1835432 ~ 1838125 (+) True AMCG00014104
TU84672 other downstream 1771969 1879091 ~ 1881041 (+) True G67801
TU84682 other downstream 1793098 1900220 ~ 1902615 (+) True AMCG00014111
TU84815 other downstream 2019750 2126872 ~ 2130145 (+) True G67896

Expression Profile