RNA id: TU88575


Basic Information

Item Value
RNA id TU88575
length 386
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G70883
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17316253 ~ 17317556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAGAGTGTTGTTGGTTTCTTCGTTTTTTGCAGTGGCAGACAAGTAGGACAGAGATCACCACAAGTATCAGGGCTCCTATTCCAGCAATAACAGCAATAAATGTCCAAAAATCCAGGCCAAGAATCTTATCCTCTTTATTGTCTGATctacacatttcatttcagtttcatttttctCCACACTGGCACAATTCTTTGCAATGCAAGTAATCTTAGGAGAATGTGCATATTGTTCTTTTACATTGTAAGTCACATTTCCACTGGATATATTCAGagattttccatttaattccaATTCAAGAGTCCCTTCATCAATGCTTCTGGCCCCACAGGATATTGTTTTTGTACTGCAGTCGATTGTCAAGTATGGCTTTGATACTGATT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88555 lncRNA upstream 62582 17250319 ~ 17253671 (+) True G70865
TU88535 lncRNA upstream 143191 17132063 ~ 17173062 (+) True G70846
TU88522 lncRNA upstream 218289 17028960 ~ 17097964 (+) True G70835
TU88448 lncRNA upstream 582616 16730878 ~ 16733637 (+) True G70776
TU88391 lncRNA upstream 825135 16490411 ~ 16491118 (+) True G70735
TU88591 lncRNA downstream 31880 17349436 ~ 17350952 (+) True G70897
TU88599 lncRNA downstream 85955 17403511 ~ 17453367 (+) True AMCG00014553
TU88604 lncRNA downstream 100883 17418439 ~ 17487050 (+) False AMCG00014553
TU88613 lncRNA downstream 172270 17489826 ~ 17490607 (+) True G70908
TU88649 lncRNA downstream 333215 17650771 ~ 17651002 (+) True G70938
AMCG00014536 mRNA upstream 550701 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014538 mRNA upstream 584384 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014537 mRNA upstream 596516 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014535 mRNA upstream 704592 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014531 mRNA upstream 738096 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014552 mRNA downstream 11357 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014553 mRNA downstream 47242 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014560 mRNA downstream 462009 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014565 mRNA downstream 632004 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014564 mRNA downstream 720552 18038108 ~ 18067182 (+) True AMCG00014564
TU88385 other upstream 847140 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 1183451 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1636465 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 1636465 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2959385 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 85955 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 954298 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 5537786 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 10517947 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 10551147 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile