RNA id: TU88951


Basic Information

Item Value
RNA id TU88951
length 325
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G71133
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18664264 ~ 18664631 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttcttgcaatctATCTGGCCCATTGATACTTTAAGATgttaaatgagggaaattatttataggccgctaactcaaatattccaaatgacacttagaacaggggatgtgccaactgactggaagacagcaaatgtcataccaatccacaagaaagagacaaaactgagccaggaaattacagaccaatcagtctcacctgcatcacctgtaaaatgaaaaccatattcttggagatagtcaacatgggtttagacgaggcagatcatgtcttactaatctattagagttctttgaacatgcaactgcagctgtggatcatgtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88747 lncRNA downstream 333164 18329197 ~ 18331100 (-) True G71016
TU88673 lncRNA downstream 642169 18014826 ~ 18022095 (-) True AMCG00014567
TU88667 lncRNA downstream 660241 18003810 ~ 18004023 (-) True G70954
TU88648 lncRNA downstream 1048359 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 1215547 17446868 ~ 17448717 (-) False AMCG00014555
TU88975 lncRNA upstream 4170 18668801 ~ 18669655 (-) True G71157
TU88981 lncRNA upstream 21867 18686498 ~ 18687346 (-) True G71160
TU89001 lncRNA upstream 186093 18850724 ~ 18851111 (-) True G71174
TU89007 lncRNA upstream 209974 18874605 ~ 18878253 (-) True G71179
TU89158 lncRNA upstream 526754 19191385 ~ 19191632 (-) True G71284
AMCG00014585 mRNA downstream 19594 18639812 ~ 18644670 (-) True AMCG00014585
AMCG00014579 mRNA downstream 106976 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014576 mRNA downstream 176984 18485261 ~ 18487280 (-) True AMCG00014576
AMCG00014577 mRNA downstream 186342 18475543 ~ 18477922 (-) True AMCG00014577
AMCG00014578 mRNA downstream 195982 18467410 ~ 18468282 (-) True AMCG00014578
AMCG00014588 mRNA upstream 31444 18696075 ~ 18709409 (-) True AMCG00014588
AMCG00014589 mRNA upstream 56174 18720805 ~ 18766660 (-) True AMCG00014589
AMCG00014590 mRNA upstream 112145 18776776 ~ 18777608 (-) True AMCG00014590
AMCG00014593 mRNA upstream 267506 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014597 mRNA upstream 306805 18971436 ~ 18999017 (-) True AMCG00014597
TU87063 other downstream 7001771 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7866117 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9347097 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10280040 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10505674 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9665108 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10724659 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13598536 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13932831 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13932831 32597462 ~ 32619149 (-) False G73127

Expression Profile